Ruditapes philippinarum (Manila clam): 132732489
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Entry
132732489 CDS
T09557
Name
(RefSeq) activating signal cointegrator 1 complex subunit 3-like
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132732489
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132732489
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
132732489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
Helicase_PWI
AAA_22
Motif
Other DBs
NCBI-GeneID:
132732489
NCBI-ProteinID:
XP_060574906
LinkDB
All DBs
Position
Unknown
AA seq
2201 aa
AA seq
DB search
MSELPRLTGALRAFTGLSGTSLSESFQDEELLKKRQFMTKKKTSVEGSGWQKLTEKIREK
SSASKDEIAGWFKELLHDANQIVGDTADEEIIESAAVYLFSVFKTADKVTQKQTNTLKSV
FGPFPASVVTKTCTVVNKITSTLPDDVIQLLGNQVREEADGEATVTEFGKSLKFIYQKPI
IKDGEISSSDSEEEDRQMEVDLNYRKSTQTSSGKQEVKKESGPNIDAEWLQQEVAKYYGG
SDSTALGMSLEDFAATIFDVLCSPKSDSELQNDLFELLGFERFELIQSLLGNREKLLYSA
TQEPETKKSNLSKNDFLFSGTKTEGSSKPGYGCQVTIQSEEEKAMLKKIRKEEKKMDKRG
NVRGEDMDDIGGFNPAELRAQREAALLYAKSAPMFSGKSSHTTRERYPYVFDKMEEARIS
SAFIGGVKMHLPDTISRNNNKVYEEVNIPHSDAAPTHVGDKRVTIDTLDEIARMAFKNTK
SLNRIQSVVFETAYKTNENLLICAPTGAGKTNIAMLTILHEMTQHISQGVIKKDDFKIIY
VAPMKALAAEMVRNFGSRLEPLGISVRELTGDMSLTKSEIMKTQMMVTTPEKWDVVTRKS
TGDVALAQLVKLLIIDEVHLLHDDRGSVIESLVARTLRQVETSQSMIRIVGLSATLPNYI
DVARFLHVNPYLGLFFFDGRFRPVPLGMTFIGIKALNRVQQMQDFNLVCYEKVLYQVKRG
YQVMVFVHARNETVRTASVLRDHAKNNGDINLFYPEQSASYGDALKNIMKSRNKQMKELF
TDGFSTHHAGMLRQDRNLVEKYFAAGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYDAKK
GSFVDLGILDVMQIFGRAGRPQFDTFGHGTIITTHDKLSHYLSLMTRQNPIESQFVNSLT
DNLNAEIALGTVTNVEEAVKWLSYTYLYVRLTCNPLVYGVPYASVEEDPTLTQYRTELII
DAGRKLDKARMVRFDERTGYFASTDQGRIASHFYIKYDTVEVINEYLKTVMTEADIFALV
SKSQEFDQIKVRDEEMEELEKLLHDTCEMQVPGGVENSYGKVNILLQSFVSRQYLDSFSL
VSDQSYVAQNAARITRSLFEICLKKGWPIMASRLLNLSKTIDKKIWGFETPLRQFSILPQ
EIISKLEARNLKVDKLREMDAKEIGHMVHHIKMGSTIKKCVHQLPLVDLEATIQPITRTV
LRVRLTITPMFKWDDKVHGTAAESFWIWVEDPDNNHIYHSEYFLLHKKQMYSKEPQTLVF
TIPIFEPLPTQYYVKAISDRWLGSETMCAISFQHLILPERHPPHTELLDLQPLPVTALMN
PMLETLYKFSHFNPIQTQLFHVLYHSDHNVLLGAPTGSGKTIAAELAIFRVFRERPNNKA
VYIAPLKALVRERMEDWRVRIEQKLGKKVVELTGDVTPDMRAIAKADLIVTTPEKWDGVS
RSWQTRNYVKAVSLIVIDEIHLLGNDRGPVLEVIVSRTNFISSHTEKKVRVVGLSTALAN
ARDLADWLAIGQVGLYNFRPSVRPVPLEVHIHGFPGQHYCPRMATMNKPTFQAIKSHSPS
KPVLIFVSSRRQTRLTALDLIAFLAGEDNPKQWLHMPENENENIISGVKDTNLKLTLAFG
IGIHHAGLVERDRKITEELFVNSKIQVLIATSTLAWGVNFPAHLVVVKGTEFYDGKTRRY
VDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKHFYKKFLYEPFPVESNLLEVLPDHL
NAEIVAGTITSKQDAMDYITWTYFFRRLVMNPSFYNLDDTDHNSINRFLSGLVEKALFEL
ESSYCLEIDEDGCTVLPQTLGRIASYYYLTHVTMRMFQSELQSDSSIPDLIETLANASEY
AELPVRHNEDQINSDLSKQVPLDVNPHTMDSAHTKANILLQCHFGQIPLPSTDYNTDTKS
VLDQAIRICQAMLDVAADQGWLVASLGITQLVQMLVQGRWWHDSSLLTLPNVTPYHIYCF
KTKKGGKEGTHRIETLPELMTVCDGHYNVLYDMLQDEMDKQHIDQIFQVLSKLPQIEMMF
TVKGWWEGGDGKQEQRAIDTSSQGGRVSDRQWVQVHADQEYVLQIQLNRINKMKKTDRKA
YTPRFPKPKDEGWFLIIGNVDARDLVALKRVPCIRGKSDVQVSVYMPETTGRVIYTAYLM
SDSYLGLDQQYDLHFDVIQQSIEAQVNTELIDELDGLDFNS
NT seq
6606 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagcttccaagacttactggtgctctcagagccttcacaggtctgtctggaact
tccctatctgagtcttttcaagatgaagagttgcttaagaagagacaatttatgacaaag
aaaaaaacatctgttgaaggttcaggatggcaaaagcttactgaaaaaataagagagaaa
agttcagcatctaaagatgagattgctggatggtttaaagagcttctacatgatgcaaat
cagatagttggagatactgcggatgaagaaatcattgaaagtgctgcagtttatctgttc
tccgtgtttaaaactgccgataaggtaactcagaaacaaacaaacacattaaaaagtgtt
tttggcccttttcctgcatctgtagtgacaaaaacctgtactgtagtaaataagatcaca
tctacattacctgatgatgtcatacagttgcttggcaaccaggtacgagaagaagcagac
ggcgaggcaactgtcactgaattcggaaaatcactgaaattcatctatcagaaacccatc
attaaagatggagaaatatcgagctctgattcggaagaggaagacaggcagatggaagta
gatttgaattataggaaaagcacacagacttctagtggtaaacaggaagtgaaaaaagaa
agtggcccgaatatagatgcagaatggctgcagcaggaagtagcaaagtattatggggga
agtgattctacagctttaggaatgagtttggaagattttgctgccactatatttgatgtt
ttgtgttctccaaagtcggattcagagctacagaatgatttatttgaacttcttggattt
gagcgttttgagctgatacaaagtctacttggtaacagagagaaacttctgtacagtgct
acacaggaacctgaaactaagaaatctaatttgtcaaaaaatgatttccttttttcagga
actaagactgaaggttcaagtaaacctggctatggatgtcaagtcactatacagtctgag
gaagagaaggccatgttgaaaaaaatacgtaaagaggagaagaagatggataaacgtggt
aatgttcgtggtgaagatatggatgatattggtggatttaatcctgcagagctacgtgca
cagagagaggcagcattactgtatgctaagtcagcaccaatgttcagtgggaaatcaagt
cataccaccagggaacgttacccatacgtgtttgataaaatggaggaggcaagaatttca
tcagcctttattggcggtgtgaagatgcatttaccagacactatatcacgtaacaataac
aaggtgtatgaggaagtgaacatacctcatagtgatgctgcaccgacccatgtcggagat
aaacgtgttactatagatacactagatgagattgctagaatggccttcaaaaatactaag
tccctgaataggatccagtcagtggtatttgagacagcctataaaacaaatgagaatctg
ttgatatgtgcaccaacaggggcgggtaaaaccaacattgctatgttgactatactacat
gagatgacacaacatatctcccagggtgtcatcaagaaagatgactttaagataatctat
gtggctccaatgaaggctctggctgctgagatggttcggaactttgggagcagacttgaa
cctctaggtatctctgtgagagagcttactggtgacatgtctctcaccaaatctgaaatc
atgaaaacacagatgatggtaacaacaccagagaagtgggacgtggtgaccagaaaaagt
accggggatgtagcattagctcagctggttaagttgttgatcatagatgaagtgcactta
ctacacgatgacagaggttctgttatagaaagtctggtggctcgtacactaagacaggtt
gagacatcacaaagtatgatcagaattgtgggcctgtcagctaccctgcctaactatata
gatgttgcaagattcctccatgtcaacccttatctaggtctgttcttctttgatggcaga
ttccgaccagttcctcttggaatgacatttataggaataaaagcgttgaaccgtgttcag
cagatgcaggactttaacttggtttgctatgagaaagtattgtaccaggtaaagcgtggc
taccaggtgatggtgtttgttcacgcacgtaacgagactgtacgaacagcatccgtgttg
cgagatcacgccaagaataatggagatatcaacctgttttaccctgaacaatcagcctca
tatggagatgctcttaaaaatataatgaagtctaggaacaagcagatgaaggagttattt
acggacggtttcagcactcaccatgctggtatgttacgtcaggatcgtaatcttgtagag
aaatacttcgctgcgggacatatcaaggtgctcgtgtgtacagctacactggcatggggc
gtgaatcttccagcccatgctgttgtcattaagggcacccagatatatgatgccaagaag
ggatcatttgttgatctaggtatcctagacgtgatgcagatatttggacgtgccggacga
ccccagtttgacacatttggtcacggtactataatcaccacccacgacaaactgtcacac
tatctctctctgatgacaagacagaatccaatagaaagtcagtttgttaacagcctaaca
gacaacctgaatgctgagattgcgctgggtacagtaacaaatgtcgaggaagctgtgaaa
tggttaagttatacgtacctgtatgtacgtctcacctgtaaccctctagtgtacggtgtc
ccatatgcaagtgtggaggaggacccgactctgactcagtaccggacagaattgatcata
gatgcaggcagaaaactagacaaggctcgtatggtaaggtttgatgaaaggacagggtac
tttgcttctacagatcagggaagaattgccagtcatttctacatcaaatatgatacagtg
gaggtaataaatgagtacttgaaaactgtgatgaccgaggcagacatttttgctctagtc
tcaaagtctcaggaatttgatcagataaaggttcgtgatgaagaaatggaagagctagag
aagttattacatgatacatgtgagatgcaggttcctggtggtgtagagaactcctatggt
aaagtgaacattctactgcagagttttgtatcccgtcaatatcttgacagtttctctctg
gtttctgaccaatcttatgttgctcagaatgcagcaagaatcactaggtctttatttgag
atctgcctgaagaaggggtggccaatcatggccagtcgtctactcaacttaagcaagacc
atagacaaaaagatctggggtttcgagactcccctcagacagttttctattctccctcaa
gaaataatcagcaagctagaggcaaggaatctcaaagtagataaactaagggaaatggat
gcaaaagagattggtcacatggtacatcatataaagatgggaagtacaataaagaagtgt
gtacaccagctaccattggttgatttagaagctacaattcagccaatcacacgcactgta
ctcagagtgaggctcactatcacacccatgtttaaatgggatgataaggtgcatggtaca
gcagcagaatctttctggatctgggtagaagaccctgataacaatcacatctaccactca
gagtatttcttgctacacaagaaacagatgtacagtaaggagccacagactcttgtgttc
actataccaatatttgagccgttacctacgcagtattacgtgaaggcaatatctgaccga
tggctgggtagtgaaacaatgtgtgccatatccttccagcatcttatcctaccagagaga
caccctcctcatacagagttattagatttacaaccgctaccagtgacggctttaatgaac
ccgatgttggagacactgtataaattcagtcattttaacccgatacagacccagttattt
cacgtcctgtaccattctgatcacaacgttctccttggtgctcctacagggtccggtaaa
actatagctgctgagttagctatttttagggtgtttagggaacgaccaaataacaaggct
gtgtatattgctccattgaaagctcttgtacgagagagaatggaagactggagagtcagg
attgaacagaagcttggaaaaaaggtggtagagttgacaggtgatgtgacaccagatatg
agggctatagctaaagctgatcttatagtgacaacaccagagaaatgggatggtgtgtcc
agaagttggcagacaagaaactatgtgaaagccgtctctcttattgtgatagatgaaatt
catcttctaggaaatgacagagggcctgttttagaggtgattgtctcaagaaccaacttt
atctcttcacatacagagaagaaagtgagagttgtaggtttgtctactgctctagctaat
gccagggatctagctgactggctggctataggacaggttggtttgtacaatttccgtcca
tctgtgcgtccagttccattagaggtacatatacatggtttccccggacagcattattgt
ccaaggatggctaccatgaataaacctacatttcaagcgatcaaatctcactcacccagt
aaaccagtcctgatctttgtatcgtcacgacgacagaccagacttacagccctcgatcta
atcgcatttcttgcgggagaagacaatcctaaacaatggttacacatgccagagaacgag
aatgagaacattataagtggagttaaagacaccaatctcaagttaactctggcctttggt
ataggtattcatcatgctggactggtagagagagataggaaaatcacagaggagctcttt
gtcaactcgaaaattcaggtgcttattgctaccagtacactggcatggggtgtgaatttc
ccagctcatctggtggtagtcaagggtacagagttttatgatggcaagacaaggagatat
gttgacttccctataacagatgtattacagatgatgggtcgggcaggtcggccacagttt
gatgaccaagggaaagctgttatactggtgcatgacataaagaaacatttctacaagaag
tttctctatgaacctttccctgtggaatctaatttactagaagtattgccagaccatctg
aatgctgagatagtagccggaacaattacctctaaacaagatgccatggactacatcacc
tggacctacttcttccgcagactcgtcatgaacccaagtttctacaacctagatgacaca
gatcataatagtattaacaggttcctgtcaggactggtggagaaagccttgtttgagtta
gaaagctcttactgtttagaaattgatgaggatggctgtacagtacttccacagacactg
ggtagaattgcttcctattactatctcacacatgtcacaatgcgaatgtttcaaagtgag
cttcagagtgattcgtctataccagatctgatagaaacactagcgaatgcatcagaatat
gcagagcttcctgtaagacacaatgaagatcagataaatagtgatttatcaaagcaagtg
ccacttgatgtgaatccacatacaatggactctgctcacacgaaggcaaacatattgtta
cagtgtcactttggtcagatacccctcccgtctactgactacaacactgatacaaaatct
gtgttagatcaggcaataagaatctgtcaggcaatgctggacgtagcagcagaccagggt
tggttggtggcatcgcttggtatcacacagctggtacaaatgttggttcaaggtcgctgg
tggcacgactcctcgttactcacccttcctaatgttacaccatatcatatctactgcttt
aaaactaagaagggaggtaaggaaggcacacaccgtatagaaacattaccagagttgatg
acagtatgtgatggacattataatgttctgtatgacatgttacaagatgagatggacaaa
caacatatagatcagatattccaagtattgtcaaagttaccacagatagagatgatgttt
acagtgaagggttggtgggaaggtggtgatggtaaacaagaacagagagccatagatact
tctagtcaaggaggaagagtatctgacagacagtgggtacaagtacatgcggaccaggaa
tatgttttacaaatacaacttaacagaatcaataaaatgaagaagacagacaggaaggca
tacactccacggtttccaaaacccaaagatgagggctggttcctgatcattggtaatgtg
gatgctagagatctggtagcattgaaacgtgtgccttgtatcagaggtaaatcagatgtg
caggtatcggtgtacatgccagagactacaggtcgggtgatatatacagcatatctgatg
agtgactcataccttggtctcgaccaacaatacgaccttcactttgatgttatacaacag
agcatagaggctcaagttaatactgagctgattgacgagcttgacggtcttgacttcaac
tcttga
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integrated database retrieval system
