Ruditapes philippinarum (Manila clam): 132732496
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Entry
132732496 CDS
T09557
Name
(RefSeq) nuclear cap-binding protein subunit 1-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
rphi03015
mRNA surveillance pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132732496
09122 Translation
03013 Nucleocytoplasmic transport
132732496
03015 mRNA surveillance pathway
132732496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132732496
03041 Spliceosome [BR:
rphi03041
]
132732496
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
132732496
Spliceosome [BR:
rphi03041
]
Common components
Common spliceosomal components
Cap binding complex
132732496
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Motif
Other DBs
NCBI-GeneID:
132732496
NCBI-ProteinID:
XP_060574912
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MASRRRRASFSDDEDDTVHRKRRRTSENVDIEDRLESLISRVGEKSTSSLESNLEGLASV
LEADLPNYKTKIIRILCECAVKLPEKQAVYTTLVGLLNAKNYNFGGEFVEMLVRNMKEAL
KTEEFESARLIIRFIADLVNCRVIVAGSLLAMFDNFIEVTLEDNIPQVRSDWYVYAVLTS
LPWVGRELYEKKEMEFQKLLVSIDGYISKRQKIHVPALRVWSTDTPHPQEEYLDCLWAQI
KNLRNNKWIEKQVPRPYLAFDSVLCEALQHPLPQIIPPSHNEEIMYPLPTVVFRMFDYTD
VPEGPAIPGSHAIDRFLIEEEMRYLIKTHNQDRKDCAAALLSYTTKNKIPLNYMIVEVMF
GQLFRLPQPPYLEIFYGSTLIELCKLQPGSMPQVLAQATEMLYERLDTMKSPCIERFSNW
FAYHLSNFQFRWSWDDWIACTQVNPLLPKPKFVTEVLHKCLRLSYHQRIKDTVPEAFREL
IPAKPQARYKYEEEGAGSLPGTMVSHQLIDAIKSKCTPEETLVLLKELPNPLADDTDEPS
HHPLRIDVFVSTLLHLGSKSFSHSFAAIAKFHFVLKMLAESEEGQICLLKTMYEVWSTHP
QMMVVLTDKLLKTQIVECSSVANWLFSADMAPDFTRNYVWEIMHYCSVTGTMYGR
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagaaggcgccgtgcgtcatttagtgacgatgaagatgatactgttcacagg
aaaagaaggaggacatctgaaaatgttgacattgaggacaggcttgagtcacttatttct
agagttggagagaagagtacatcatcactggagagtaatttagaaggtctagcaagtgtc
ctggaagctgatttacccaattacaaaacaaaaattatcaggattttatgtgaatgtgct
gtcaaattaccagagaagcaggctgtctacactacattggttggtctcctcaatgccaaa
aattacaattttggaggggagtttgtcgaaatgctggtgcgaaatatgaaagaagcgcta
aaaactgaagagtttgagtctgctaggcttattatccggttcatagctgaccttgtaaac
tgccgagtcatagtagctggttccctgctcgccatgtttgacaattttattgaagtgaca
ttagaagataatataccacaggtgagatcagactggtatgtgtatgccgtactgacgtca
ctaccatgggttggtagagaattgtatgagaagaaagagatggaatttcagaagttactg
gtcagtatagatggttatataagtaaaagacagaagatacatgtaccagcattaagggtg
tggtctactgatactccccacccacaagaagagtacttggattgtctgtgggcgcagatt
aagaatttgcggaacaacaaatggatcgagaagcaagtgccgcggccatatttggcgttt
gacagcgttttatgcgaggctctacaacacccgttaccccagataatccctccgtctcac
aacgaagagattatgtacccgctacctacggtcgtcttcagaatgttcgactacacagat
gttccagagggtccagctattccaggcagtcatgctatagatcgattccttattgaagaa
gagatgagatatttgatcaagacgcacaaccaagacagaaaagattgtgccgcagctttg
ctgagctacacgaccaagaacaaaattcccctgaactatatgattgtcgaggtgatgttt
ggtcaactattcagattacctcaacccccataccttgagattttctatggttcaacactg
atagagctgtgtaaactacaaccagggtccatgccacaagttttggctcaagctacagaa
atgttgtatgagagactggatacgatgaagtctccatgtattgaaaggttttccaactgg
tttgcctaccatttgagtaacttccagttcagatggagctgggatgattggattgcatgt
acacaggtcaacccgcttctccctaaacctaagtttgttacagaggttctccataaatgc
ctaagattgtcgtatcatcaaaggatcaaagacacggtaccagaagcctttagagaactg
ataccagccaaacctcaagccaggtacaagtacgaggaagaaggggcaggatcattgccg
ggtaccatggtttcccatcagttgatagatgccatcaaatcaaaatgtacaccagaagag
acgctggtcttattgaaagaattaccaaatcccctagctgatgatacagatgagccgtca
caccaccctctcagaatagatgtgtttgtgtctacactgttacatcttggatctaaatct
ttctcccattcatttgctgccattgcaaagtttcattttgtattgaagatgttggccgag
tctgaggaaggccagatatgtctcctgaagacaatgtatgaagtctggagtacacatcca
caaatgatggtagttctgacagacaagcttctgaagacacagatcgtagagtgctcatct
gttgctaactggctcttctcagccgacatggcaccagatttcaccaggaactatgtatgg
gagataatgcactattgttctgttacaggaactatgtatgggagataa
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