Ruditapes philippinarum (Manila clam): 132732582
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Entry
132732582 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MARCHF6-like
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132732582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132732582
Enzymes [BR:
rphi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132732582
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
132732582
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
Motif
Other DBs
NCBI-GeneID:
132732582
NCBI-ProteinID:
XP_060575044
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
MDVDDTDEPQTDICRVCRCEGTSDKPLYHPCVCTGSIKFIHQDCLVQWLKYSRKEFCELC
KHRFAFTPIYSPDMPKRLPIKDIVSGLLGSVGKAVRYWFHYTLVTFAWLGVVPLTACRIY
RCLFTGSVSSLLTLPLDMLSTENIASDCFHGCFVVACTLCAFISLVWLREQILHGGGPDW
LEQDVPGVQQRNPLDIGVVNNLVGLGGGGARDGAANQNNQNEDNNAEAANEGEEEVEEEG
ADNGNNAAQDDNNWNPIEWDRAAEELTWERLLGLDGSLVFLEHVFWVVSLNTLFILVFAF
CPYHIGHFTMIGMKMEDVVEASHFEGLLTTLIGYVVIAFSLIFLYAICSLIRLKRFPRVF
GLCYVVVKVKLLVVIEIGVFPLICGWWLDICSLSMFDATLKDRKTSFHVAPGTSMFIHWL
VGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPEFNPIQEMIHLPVYRXSPKFLLIVII
FGTFFYDLVAVRFSEKFFPGFLPYNVMLSSDAPVSELSLELLLLQVVLPALLEQGHTRMW
LKGLVRGWTLCVAWMLNLRSYLVGDVQLDDHDNVIQGDAAAPPAGPPPPPAGNQGNNAPN
NPVPPPGQPGGLAAAHQAMLQAGGPTGFQSYKRPKLFYFRIVLLVALMCFTLFAASVVCL
ILPVFFGRKLMSLWMGEAKIHELYTAACGLYVCWLMLRIGTVLYNWIPQGTAAILNKLKQ
WLILALKSLFVAVILMGVVPLLLGLLFELVVVAPLRVSLDQTPVFFPWQDWALGVLHTKI
ICAVTMMGPQWWLKRVIEQVYNDGLRNMNLKFILYKLCFPVIGVLGMSLSVPYVIARSLV
PALGFDFDVQNFVLRRIYPFLLACVVMVFVCVFQARQFKRLYEHIKNDKYLVGQRLVNYD
PKRFVRKLTTEQTAKQT
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgacgacacagatgagccacagacagatatatgtcgtgtgtgcagatgtgag
gggacgtctgataaacccctgtatcatccatgtgtctgcacaggcagtatcaaatttata
catcaagactgtctggtacaatggttaaaatacagcagaaaggagttttgcgaactttgc
aaacatcggtttgcttttacaccaatttactcaccagatatgccaaagaggttacctata
aaggatatagtgagtgggttgttaggtagtgtaggaaaagccgtcagatattggttccat
tatacactcgtcacgtttgcctggcttggtgttgtaccattaacagcttgtcgtatttac
agatgtctgtttactggatctgttagctcattattaacattaccacttgatatgttatct
actgaaaatattgcgtcagattgtttccatggttgttttgttgtggcatgtacattatgt
gcatttatcagcttggtgtggctacgtgaacagatcctgcatggaggagggcccgattgg
ttagaacaggacgtgcctggtgtacaacaaaggaatcctttggatatcggtgttgtaaac
aatcttgttggtttgggagggggcggagctagagatggagcagccaatcagaacaatcag
aatgaagataacaatgctgaggcagccaatgagggtgaagaagaggtggaagaggaaggt
gcagataatggaaataacgctgcacaagatgacaataattggaatccaatagaatgggac
agggcagctgaagaacttacctgggagaggcttcttggattagacggctctcttgttttc
cttgaacatgtattctgggttgtgtctcttaacacattatttatacttgtatttgcattt
tgtccatatcatattggtcactttacaatgattggaatgaaaatggaagatgtggttgaa
gcatcacattttgagggtttactaacgacattgattggctatgttgttatagcattctct
ctgattttcttgtatgccatctgttccttgatcagattaaaaaggtttccacgagtgttt
ggtctgtgttatgtggttgtcaaggtgaagttattggttgtcatagaaattggcgtgttt
ccattgatatgtggctggtggctagatatctgttccctgtccatgtttgacgctacattg
aaagatcgtaagacaagttttcatgtggcacctggtacatctatgtttatccactggctg
gttggtatggtgtatgtattctacttcgcctcatttatattgttactgagggaggtgctc
cgaccgggcgtactctggttcctcagaaacctcaacgatccagagtttaatccaatacaa
gagatgatacatctgccagtgtacagannctccccgaagtttttgttgattgttatcata
tttggtacatttttttatgatcttgttgccgtgagattttcagaaaagttttttccaggt
ttcctgccatataacgtcatgttgtcaagtgatgcacctgtcagtgaactatctctagaa
ctgttgttattacaagtggttctacctgcactgctagagcaaggtcatactaggatgtgg
ttaaagggcttggtgcggggctggaccctgtgtgtagcctggatgcttaatctacgatca
taccttgtcggggatgtgcagcttgacgaccatgataatgttatacaaggtgatgctgca
gcacctcccgctggtccaccacccccacctgctggtaaccagggtaacaatgccccgaac
aatcctgtacctccaccaggccagccagggggacttgcagcggcccatcaagctatgtta
caggctggaggcccaacaggctttcaatcatacaagaggccaaaactcttttattttaga
atcgtgttgctggtagcactgatgtgttttacattatttgcagccagtgttgtttgtctt
atactgccagtattttttggccgaaagttgatgtcattgtggatgggagaagctaaaatt
catgaactttatacagctgcgtgtggattatacgtttgttggttaatgttaaggatagga
acagttctgtataactggataccacagggtactgcggccatactcaataaacttaaacag
tggcttattttggcattaaagtcactatttgtagctgtaattttgatgggagttgtgcca
ttgttactgggtctgttgtttgagcttgtagtggtagcaccattgagggtgtcactggat
cagaccccagtcttcttcccctggcaggactgggcattaggtgttttacatactaaaatt
atatgcgctgttacaatgatgggtccacaatggtggctcaaacgtgtcattgagcaggtg
tataacgatggattacgcaacatgaatctcaaatttattctttacaagttatgttttcct
gtcattggtgtgctaggcatgtcgttatctgtgccatatgttatagcaagaagtcttgtt
ccagcattaggttttgattttgatgtacagaattttgtattacgaagaatttacccattc
ctgttagcgtgtgttgttatggtgtttgtgtgtgtattccaagctagacagtttaaaagg
ctttatgaacatattaaaaatgacaaatatttagttggtcaaagacttgtaaattatgat
ccaaagagatttgttcgaaaattaaccacagaacagacggcgaaacagacgtga
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