KEGG   Ruditapes philippinarum (Manila clam): 132733741
Entry
132733741         CDS       T09557                                 
Name
(RefSeq) periodic tryptophan protein 2 homolog
  KO
K14558  periodic tryptophan protein 2
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    132733741
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rphi03009]
    132733741
Ribosome biogenesis [BR:rphi03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    132733741
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Utp12 EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_SCAP RMC1_N Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_EIPR1 PROPPIN WD_LRWD1 Beta-prop_Nup120_160 Utp21
Other DBs
NCBI-GeneID: 132733741
NCBI-ProteinID: XP_060576398
LinkDB
Position
Unknown
AA seq 791 aa
MGHNILRNLIVYSIGGHNDEIVGAYFEKDSLDLYTISANGRLNIWECDTDLSGLKPYEAP
KGNLPKIEVNSDDEDEGPYGEPKNKSKEVKLSKEEEMKQVDKVIYKKTARHSYKEARGDK
ASRGTVTSSAYHKSTHILVTGFDDGVFFLHEMPDFNLIHSLSISDKTIATVDFNKIGDWI
AFGCSGLGQLLVWEWQSETYVLKQQGHYNNMNCVVYSPDGQNLATGGDDGKVKVWNTSSG
FCFVTFTEHLGGITGVVFNQNGQVVLSSSLDGTVRAFDLNRYRNFRTFTSPRPAQFSCLT
IDPSGDLVCAGAQDTFEIFVWSMQTGRLLEVLAGHEGPVSSLSFSPTETLLASGSWDKSV
KLWDIFDNKGAKETLEVSSDVLAVAFRPDGGELAVSTLNAQITFWEPHQAKQVGSIEGRH
DVGYSRKEQEKITAKKSAFGKAFNTICYSADGKCILAAGRSKNVCIYSVEDQLIIKKFEI
TCNMSFDGMEEFLDKRKMTEFGSLSLVDSEEGKDLSLPGVKKGDMSSRHWKPEVRVSSVR
FSPTGRAWAATTTEGLLMYSLDSNLVFDPFDLDIDITPSNVKKTLAKGEHSTALMLSFRL
NEHSLIQEVLENIPVSDVEVIVDNLPDVYVDKLMSFVAGMIESTAHIEFYLIWASRLLMQ
HGPRLKQRSQQVMATLRSMQKNVTRKSEELGKICDHNKYSIQYIIALSKAKRKFVEASDS
VEAGNGGVEPASDDDDENREPGTDDNIMEGESENELESDDELENIVKENNGEILTDSDEE
SGSSSSSMDAT
NT seq 2376 nt   +upstreamnt  +downstreamnt
atggggcacaacattttacgaaatctgatcgtctattccatcggaggacataatgacgaa
atagttggagcttactttgagaaagattctctcgatttatatacgataagtgctaatggt
agattgaacatatgggaatgtgatactgacttatcaggactgaaaccttatgaggcacca
aagggaaacctgcctaaaattgaggtcaactcagatgatgaagatgaggggccatatggg
gaacctaaaaataaaagtaaagaagtgaaattgagcaaagaggaagaaatgaagcaagtt
gataaagtgatttataagaaaaccgccaggcattcctacaaagaggcacgaggggacaag
gcatctcgaggaactgttactagctcagcttatcataaatcaacacatatactggtgacc
ggttttgatgatggtgtcttcttccttcatgaaatgccagattttaacctcatacattca
ctaagcatttcagacaagactatcgcaacagtagatttcaacaagataggtgactggata
gcatttggatgttcgggcctcggtcaacttctcgtgtgggaatggcagagtgagacatac
gtgttgaagcagcaagggcattataataacatgaattgtgttgtgtactcaccagacgga
cagaacctggctacaggaggggatgatgggaaggtgaaggtatggaacactagtagtggg
ttctgttttgtgacatttacagaacatctcggaggtataacaggcgtggtgttcaatcag
aacggacaggtggtgctatcctcatcactagacggcactgtgcgggcatttgatctgaac
aggtaccgaaatttccgcacattcacgtcgccccgcccagcacaattttcgtgtcttaca
attgaccctagtggagatctagtgtgtgccggggctcaggacacatttgaaatatttgta
tggtcaatgcagactggacggcttctagaggtgttagctggtcatgaagggccggtaagc
agtctcagtttcagcccaacagagacattgctggcgtccggctcttgggataagtcagtc
aagttatgggatatatttgataacaaaggtgctaaagagacattggaggtttcctcagac
gtattagcagtggcatttcgtcccgatggaggagagcttgctgtatctacgttgaatgcc
cagatcaccttctgggagccccatcaggctaaacaggtggggtccattgaggggagacat
gatgtaggatactcaagaaaggaacaagagaagataactgctaaaaaatccgcatttgga
aaggcatttaatactatatgttactctgctgatgggaaatgtatattagctgctggtagg
tcaaagaatgtgtgtatatactcagtagaggaccagttgatcatcaagaaatttgaaatc
acctgcaacatgtcgtttgatggaatggaggagtttttggacaagagaaagatgacagag
tttggtagtctctccctggtagattctgaagagggcaaagatttaagtttacctggtgtg
aagaaaggtgacatgtcgtcaagacactggaaacctgaagttcgagtttcttctgtcaga
ttttctccaacaggaagggcctgggctgctactacaacagaaggacttctcatgtactca
ttagacagtaatcttgtgtttgatccattcgaccttgacattgatattactccctccaat
gtgaagaagacactggcaaagggagagcactctactgcactgatgctgagttttcgttta
aatgagcacagtctgatacaggaagtgctggaaaatataccagtctctgatgttgaagtg
attgtggataatctaccagatgtttatgtcgataagttgatgtcgtttgtggcgggtatg
atagaatcaacagcacacatagaattctacctgatatgggcgagtaggcttctcatgcag
catggaccgaggttaaaacaaaggtcacaacaagtcatggccacgctgaggtcaatgcag
aaaaatgttacacgtaaatctgaggagttggggaaaatatgtgatcacaataaatatagt
atccagtatataattgcattgtccaaggccaagagaaaatttgtggaggcatcagatagt
gttgaagcagggaatggaggagtggaaccagccagtgatgatgatgacgaaaacagggaa
ccaggcacagatgataatataatggagggtgaatctgaaaatgaactcgagtcagatgat
gaacttgaaaatatagtgaaagagaataatggtgaaatattgacagactctgatgaagaa
tctggaagttctagttcctcaatggatgctacatga

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