KEGG   Ruditapes philippinarum (Manila clam): 132733872
Entry
132733872         CDS       T09557                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
rphi  Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rphi03036]
    132733872
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132733872
Chromosome and associated proteins [BR:rphi03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    132733872
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     132733872
SSDB
Motif
Pfam: MMS19_N MMS19_C TOR1L1_N HEAT_EZ HEAT_ECM29 HEAT_EF3_N HEAT_2 HEAT
Other DBs
NCBI-GeneID: 132733872
NCBI-ProteinID: XP_060576580
LinkDB
Position
Unknown
AA seq 1018 aa
MDAPMKSCIERFFEDSDNSAPKALCKELVGGNVTLTDIIENLGDYLTNKEHTVRARATRL
IADILHELPVKFLNLKQVTLLSTFLCEKLKDHHSLQPQALYGLEALSKTEVISGEIIETV
CCTIFKEVHTQSLAQAGRKSVYNILLHFLTHHLQDVQKLGTDFVYGYMQAIDSEQDPRNL
ILAFTCATIVVQNFPLGVFVEEMFEVISCYFPIDFTPPASDPSGITQQDLILGLRRCLAA
TPKFAEHCLPLLMEKLTSDLKSAKIDALQTLAVCAETYGAEKLHEFQSSFFNCIKKEVFL
SGDSAVEDAGLIALQAIVKSISTGVTQSDRKKGLDGYVDEILAECKNHLLQPELMLMLSA
GRLLQAAALGSQPACDHIVKVTTPLLIESFNKQSQATPRHNVILVLNNFLDCTTKFKFGD
NNPILATYKDSVLTIYNQCLSENVSSVQLLAIKGIHTLVSLPTGCLLDTERSFITAKLVN
KAIETNIEDHVRHECNSTLLYLLTTYPDVVQKDVFPFLFAKLQNEAMETGDNCGVDRRVI
LEVISEITCGSESIKLVTGVLYKLLMNAEYLDLYQSLSKCLSAISANNVSDTGAIESLSS
GVEQVHTLVVTRCRCPKMYRILTEESTLKHLSAFLRIVISHLDPSIAVILQGKYTETFLN
GCKTSICQCCTEQDRGMFKSHMQEFSPFNASCDSVFVCLLTAVIGSGQGKFQKDIPGIET
IKDRLTEMVLEPSHSQDDVHVCKCLAALLNKQQQDESLDARVTSLYERLLTSLTSSDDKG
EGHTLTALSWVTKALVLRGHKLAQQFINLLIQLLGNSKYGKKAAEGFAVIMQDYADVMSK
VMHANIRLMYRQRFFIEHLPSILEGYQSAQPETKANYLKAVSYMIRDLSKTVLLPEITKI
YPLLIQSLHCDDLDLQLVTMETLSDLISSAPDVIEKQIDSLLPQVLKMTTYKPSMKVRIS
AIKCISSLTSLRLTVLLPYRKKVVRALLPVLDDKKRKVRMEAVTARQQWILVDMKENV
NT seq 3057 nt   +upstreamnt  +downstreamnt
atggacgcgcccatgaaaagttgcattgaaagattttttgaagattctgacaattctgcg
cccaaagcactgtgcaaagaattagttggaggaaatgttacattaactgatatcatagag
aatttaggagattatttaaccaacaaagaacatacagtcagagcaagagcaacgaggttg
atcgctgacattttacatgaactgcctgttaaatttctcaatcttaaacaagtgaccttg
ttatcaacatttctttgtgagaaattaaaagaccatcattccctacagcctcaggctttg
tatggtctagaggccctgagtaagaccgaagtgatatcaggtgagattatagaaacagtg
tgttgtacaatattcaaggaggtacatacccaatcactggctcaagctggcaggaagtct
gtatacaacattctcctacactttcttacacatcatctacaagatgtacagaagctcggg
acagactttgtgtatggttacatgcaagccattgactcagagcaagaccctagaaatctt
atcttggcatttacctgtgctactattgttgtacagaactttcctctaggggtgtttgta
gaggaaatgtttgaagtcatctcttgctattttcccatagactttactcctccagccagt
gatcctagtggtataacgcagcaagatttgattctaggtttacgtagatgtcttgctgcc
acgcctaaatttgccgagcattgtctccctttgttgatggagaaacttacctctgatttg
aagagtgcaaaaattgatgccctacaaacattggctgtgtgtgcagaaacatatggtgct
gaaaagttgcatgaattccagagctcattctttaactgtataaagaaagaggtatttctg
tcaggagattctgcagtagaagatgcaggtctcatagctctacaggccattgtgaagtca
atctctactggtgttacacagagtgacagaaagaaaggtctagatggatacgtagatgaa
attcttgcagaatgtaagaatcatctactacagccagaattgatgttaatgttatctgct
ggacgtctgctacaggccgcagctctaggatctcaaccagcttgtgatcatattgttaaa
gttaccacaccattgttgatagagtcattcaataaacaaagccaggccacacctagacac
aatgtgattcttgtgttaaataattttctagattgtacaaccaagttcaagtttggtgat
aataatcctatccttgccacatataaagattctgtattaacaatatacaatcagtgtcta
tcagagaatgtgagctctgtacagctgctagctataaaaggtatacataccctggtctcc
ctgcctacagggtgtctgttagatacagagaggtctttcattacagccaaacttgtcaac
aaagccatagaaacaaatattgaggatcatgtaaggcacgagtgtaattccactttgttg
tatttgttaactacatatccagatgttgtgcagaaagatgttttcccattcctgttcgct
aaattacaaaacgaagcaatggagacaggagataactgtggtgtagataggagagtgata
ttagaagttatctccgagataacttgtggttctgaaagtataaaactggtcactggtgta
ctctacaagttgttaatgaatgcagaatatttggacctatatcagtcactgtctaagtgc
ctatctgctatatctgccaataatgtgagtgacacaggggccatagagagtttatcatca
ggtgtagagcaggtacatacccttgttgtcaccaggtgtcgctgtcccaagatgtaccgt
atattaacagaagaatctacattgaaacatctctcagcatttctacgtatagtgatatca
catttagatccatcgatagctgttattctgcaaggaaaatacacagaaacattcctgaat
ggatgtaaaaccagtatatgtcagtgttgtactgaacaagacaggggaatgttcaaatct
cacatgcaagagttttctccctttaatgccagctgtgatagtgtgtttgtatgtttactt
actgcagtgataggatcaggccaaggaaagtttcagaaggatatacctggtattgagaca
attaaggacagattaacggagatggtacttgaaccttcacactcccaggatgatgtacat
gtgtgtaaatgtctagcagcgttactcaacaaacagcaacaagatgaatctctagatgca
agggttacttccctttatgaacgactattgacctctctgacctctagtgatgataaaggt
gaaggtcatactctaacagcgttgtcatgggttaccaaagctttagtattgagaggtcac
aaattagctcaacagtttataaacttacttattcagttgctaggcaacagtaaatatgga
aagaaagctgcagaaggttttgctgtaattatgcaagattatgcagatgtgatgtcaaag
gtcatgcatgctaatattaggttaatgtacagacaaaggttcttcattgagcacctgccc
agtattctagaggggtaccagtcagcacagccagaaactaaggcgaattacctgaaagca
gtgtcatacatgataagagatttgagtaaaactgttcttctccctgagattacaaagatt
tatcctttgttgatacaatctctgcactgtgatgaccttgaccttcaattggtaaccatg
gaaacattgagtgacctcatttccagtgcacctgatgtcatagagaaacaaattgactca
ttactgccacaggtcctcaaaatgacaacatataaaccttccatgaaagtgagaatatca
gctataaaatgtatatcatcattgacaagtttacgactgaccgtacttctgccgtaccgt
aaaaaagttgtgcgtgccctgttaccagtcttagatgataagaaacgaaaagttagaatg
gaagctgtcactgccagacaacagtggattttggtggatatgaaagaaaatgtttga

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