Ruditapes philippinarum (Manila clam): 132734436
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Entry
132734436 CDS
T09557
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132734436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132734436
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132734436
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
132734436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
132734436
NCBI-ProteinID:
XP_060577159
LinkDB
All DBs
Position
Unknown
AA seq
197 aa
AA seq
DB search
MSAPMVCVPGQRLCREEDKLKAGRGTYTRNSFIYSSLAGPLITTKNEDGMTLVEVVRNAE
ENVVPSVDALVTAKVTNVNPRFCKCAIIRVGKTTLKDSFRGMIRKEDVRATEKDKVEMYK
CFRPGDIVIARVISLGDSQSYLLTTAENELGVVIATSEAGASLVPVSWNKMRCPKTLTEE
YRKVAKVQPQYIVYSDT
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcccatggtttgtgttccaggacagcgtttatgtcgggaagaagataagttg
aaggctggtcgaggcacttacaccagaaacagtttcatatattcatcactcgcaggtcca
ttaataactacaaaaaatgaagatgggatgacattggtggaggtggtaaggaatgcagag
gaaaacgttgtcccatctgttgatgctctagttacagcaaaggtgaccaatgtgaaccct
aggttttgtaaatgtgccatcattagagttggaaaaactacattaaaagattccttccgt
gggatgataaggaaggaagatgtcagggccactgaaaaagataaggttgagatgtataaa
tgtttcaggcctggtgatattgtgattgctagagtgatctcccttggtgattcacagtct
taccttcttactacggcagaaaatgaattgggtgttgtcatagcaaccagtgaagcagga
gcgagtcttgtaccggtcagctggaataagatgaggtgccctaaaacacttacagaggag
tacagaaaagttgctaaagttcaaccacaatatattgtatactcggacacatag
DBGET
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