Ruditapes philippinarum (Manila clam): 132734474
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Entry
132734474 CDS
T09557
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132734474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132734474
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132734474
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132734474
Complex C
U5 SnRNP specific factors
132734474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
132734474
NCBI-ProteinID:
XP_060577200
LinkDB
All DBs
Position
Unknown
AA seq
2150 aa
AA seq
DB search
MADAAARSLQYEYKSNSNLVLQADRSLIDRRARDEPTSEVQSLSGKLTGIKMGDKAKRTK
PPQMEERKAKRHKRDEAQRDMLKMKGTTLLTEGISDMVGIVYRPKTPETRQTYEVLLSFI
QAAISDQPRDVLCGAADEVLAVLKNDKMREKEKKKEVEGLLGSMPEERFALLVNLGKKIT
DWVQEEKMQLEENIDETYGVNVQIEESDDDDDADVYGEVREDEEEEEESGGEEADLNVTL
SAGNLGGGDQSLSAKDSVGLHPRDIDAFWLQRNLSKYYPDDPTMAQSKSKEVLQILQASG
DDREAENQLVMLLGVDAFAFIKVLRQYRQMILYCTLLAQAQNEKEKVDIEEKMESEPELL
KILQALQAIDKEDIVSEERSRRDQARKSRVAADIEAMDTDDTQELGYVSNLDLEDLSFTH
GSHLMANKKCQLPDGSFRKQRKGYEEVHVPALKPQPFDSDESLVNIDRLPKYAQPAFEGF
QTLNRIQSRLFKAAMETDQNLLLCAPTGAGKTNVALLTMLREIGKHVNPDGTINGDEFKI
VYVAPMKSLVQEMVGGFGMRLKSYGIKVEELTGDSQVTKEQINATQIIVCTPEKWDIITR
KGGERTYTQLVRLMIFDEVHLLHDERGPVLESLVARTIRNIETTQEDVRLVGLSATLPNY
EDVATFLRVEPSEGLFFFDNSFRPVPLEQQFIGITEKKPVKRFQIMNEIVYEKVMEHAGK
NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLKEGSISTEVLRTESEHVKNLELKDLL
PYGFAIHHAGMNKVDRALVEDLFTDRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPEK
GRWVELSALDVMQMLGRAGRPQYDTKGEGIMLTNHSELQYYLSLMNQQLPIESQFIGKMA
DNLNAEVVLGTVQNVKEAVDWLGYTYLYIRMLRQPTLYGVSHDQIKDDPLLHQRRKDLIH
SAACLLDKHNLVKYDKKTGSFQVTELGRIASHFYLTHETIATYNQLLKPTLSEIELFRVF
SLSSEFKYITVREEEKLELLKLLERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALM
ADMVYVTQSASRLMRAVFEIVLHRGWAQLTDKALALCKMVDKRMWQSMTPLRQFKFKKVH
EKEEVVKRIEKKNLPFERLYDLNHNEIGELIKMPKFGKNVHKFIHQFPKLELSVHILPIT
RSTLRVELTITPDFQWDEKVHGTSEAFWILVEDVDSEVILHHEYFLLKDKFAQDEHYVKF
FVPVFEPLPPQYFIRVVSDRWIGAETLLPVSFRHLILPEKYPPPTELLDLQPLPVSALRN
PNFESLYSEKFPFFNPIQTQVFNAIYNSDDNVFVGAPTGSGKTICAEFAVLRMFSQNADG
RCVFVTPLEPLAQQMYTDWYSKFGLQLGKKVVVLTGETGTDLKLLAKGNIIISTPEKWDV
LSRRWKQRKNVQNINLFVVDELHLIGGDVGPVLEVICSRMRYISSQLERNIRIVALSSSL
SNAKDVSQWLGVSTTGFFNFHPNVRPVPLELHIQGFNISHNMSRIIAMAKPTYQGILRHA
PKKPVIVFVPSRKQTRLTAIDILTFSAAEIQTETETPRSRFLHVAEEDIAPFLDKISDKT
LKETLSNGVAYLHEGLNELERKVVEQLFSTGAVQVLVASRNLSWGMNVSAHLVIIMDTQY
YDGKTHSYEDYPVPDVLQMIGRANRPLTDNEGKAVILCQSSKKEFFKKFLYEPLPVESHL
DHCLHDHFSAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSEL
VENTITDLEQSKCIGVEDEMDVSPLNLGMIAAYYYINYTTIELFSMSLNAKTKVKGLIEI
VSNAAEYEEIPIRHHEDSVLRQLASRLPNKLANPKYNDPHVKTNLLLQAHLSRMQLSAEL
QSDTEEILSKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWAKDSYLKQLPHFSA
DIIKKCQEGSIETIFDIMEMEDEDRNKLLQFTEAQMADVAKFCNRYPNIEMTYEVAEKDS
ISSGSTVNVHVQLEREDEVTGPVVAPLFPQKREEGWWVVIGDTKNNSLLSIKRLTLQQKA
KVKLDYVAPAPGKYNYTLFFMSDAYMGCDQEYKFSIDVREGESSSESDSD
NT seq
6453 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcagcagctagatcacttcaatatgaatataaatcaaactccaatcttgta
cttcaagcagacagatctttgatagacagaagagctagagatgaaccaactagtgaagta
cagtccttgtctgggaaactcactggtattaaaatgggagacaaggctaagagaaccaaa
ccaccacaaatggaagaaagaaaagccaaacgtcataagagagatgaagctcagcgagat
atgttgaagatgaaaggaacaactttgttgactgaaggtatctctgacatggtagggatt
gtgtacagaccaaagacaccggaaactaggcagacttacgaagtcttgcttagttttata
caggctgccatcagtgatcagccacgtgatgttttatgtggggctgctgatgaagttctt
gcggtgttaaagaatgacaaaatgagagagaaagaaaagaagaaagaagtagaagggttg
cttggatccatgcctgaagaaagatttgccctgcttgtaaatcttggcaagaaaataaca
gactgggtacaggaggagaaaatgcaattggaggaaaacattgatgagacatatggtgta
aatgtacagattgaagaatcagatgatgatgatgatgccgatgtgtatggggaggtacga
gaagatgaagaagaggaggaggagtctggaggggaagaggcggaccttaatgtgacattg
tctgcagggaatcttggtggtggagaccagagtctaagtgctaaggatagtgttggactt
cacccgagagatatagatgccttttggctacagagaaacctgagtaaatattacccagat
gatccaaccatggcacagtcaaaatctaaagaagttctacaaattctccaggcatctggt
gatgacagggaggcagagaatcagttggtcatgttactgggagttgatgcatttgccttt
atcaaagttttgaggcagtatagacagatgatcctatactgtacactactggctcaagct
cagaatgagaaagaaaaagttgacatagaggagaagatggagagtgaaccagaattactg
aagattttacaggctctacaagctatagataaagaagatatcgtatctgaagagaggtca
cgtcgagaccaggcaaggaaaagccgcgtcgcagcagatattgaggccatggataccgac
gatacacaggagcttggatatgtcagcaatcttgatcttgaggacttgtcattcactcat
ggcagtcatttgatggccaacaagaagtgtcagctaccagatggatcatttagaaaacag
aggaaagggtatgaggaggtgcatgtacctgctctaaaaccacaaccgtttgactcggac
gagtcattggtgaatatagacaggctaccaaaatatgctcagccagcttttgaagggttc
caaacattgaacagaatacagagtcgcttgtttaaagcagcaatggaaacagatcaaaat
ctcctcctttgtgccccaacaggagcaggtaaaacaaatgttgcattgttgaccatgtta
cgagagattggtaagcatgtgaatcctgatggtacgatcaacggagatgagtttaagata
gtctatgtggcacccatgaaatcacttgtacaggaaatggttggcggatttggaatgaga
ttgaagtcctatggtatcaaagtagaggagttgacaggtgattctcaagtgacaaaggaa
cagataaatgccactcagattattgtttgtacaccagagaaatgggatatcattacaaga
aaaggaggggagagaacttatacacaacttgtcagacttatgatctttgatgaggtgcat
ttattgcacgatgaaagaggaccagttttagaatctcttgttgccagaacgataagaaac
attgaaactacccaagaggatgtccggcttgttggcctcagtgctactctgcctaattat
gaagacgtggccacgtttctacgtgtcgagccatctgagggcttgttcttctttgacaac
agtttcagacctgtaccgttagaacagcagtttattggtataactgagaagaaaccagtg
aagagatttcagattatgaacgagattgtctacgagaaggttatggagcatgctgggaaa
aatcaggttttggtatttgtacattcgagaaaggaaacaggaaagacagctcgtgcaata
cgagacatgtgcctggagaaagatacactgggtctcttcctgaaggaaggatcaatatca
acagaagttttacgtacagaatcggaacatgtgaagaatttggagctgaaagatctacta
ccatatggctttgctatacatcatgctggcatgaataaagttgatcgagccctggtagag
gatttgttcacagacagacatatacaagtgttagtgtcaacatcaactctcgcctggggt
gtcaatctacccgcacatactgtcattattaaagggacacaaatatacagtccagagaag
ggaagatgggtggagttaagtgcccttgatgtcatgcagatgttaggacgtgctggaaga
cctcagtatgacactaaaggagaaggtatcatgttgaccaatcacagtgagcttcagtat
tatttgtcattgatgaatcaacagttaccaattgaaagtcagtttatcggcaaaatggct
gataaccttaacgcggaggtggtcctcggcactgtacagaatgtcaaagaagcagttgat
tggctaggttacacatacctttatattcgaatgttacgtcagccgaccttgtacggagtt
agtcacgaccagatcaaagacgatccattgctgcatcaacgtcggaaagatctgattcat
tcagcagcttgtcttcttgataaacacaacctcgtcaagtatgacaaaaagacgggcagt
ttccaggtgacagagttgggacgtattgcgagccacttttaccttacacacgagacaata
gccacatacaatcagcttttgaaacctacacttagtgaaatagaactattccgagtgttc
tctctgtcatcagagtttaaatatatcacagttagagaggaagagaagttggaactgttg
aagttgctggaaagagttcctataccaatcaaagagagtattgaagaaccaagtgctaaa
gtcaatgtactgttacaggcttatatctcacagttaaagttggagggtttcgcgcttatg
gcagacatggtatatgtgacccagtctgctagtcggctaatgcgagccgtgtttgagatt
gtgttacatagaggatgggcacagcttactgacaaggctctagcactctgtaaaatggtt
gataaacgaatgtggcagtcaatgaccccgttacggcagttcaagttcaagaaagttcac
gagaaagaggaagtagtaaagagaattgagaagaagaatttaccgtttgagagactttat
gatctgaatcataacgagatcggagaactcattaagatgccaaagttcggcaagaatgtt
cacaagtttattcatcagttcccaaaactcgagctttctgtgcacattctaccaattaca
agatcaacattgagagtagagttgactataacaccagatttccagtgggacgagaaggtt
catggtacgtcagaggctttctggatccttgtggaggacgtggacagtgaagtgatcctg
caccacgaatacttccttctcaaagataagtttgcacaggatgagcattatgtgaagttt
tttgtaccagtgtttgagcctctgccccctcagtacttcatcagagttgtgtctgacagg
tggataggtgcagagacgttgctgccggtctcattccgacacttgatcttaccagagaag
tatccaccaccgacagagttactggacttgcagccactgccagtgtcagctttgagaaat
ccaaactttgaatctctctacagcgagaagtttccattcttcaacccaattcagacgcaa
gtatttaacgccatttacaacagtgatgacaatgtgtttgttggggcaccaacagggagt
ggtaaaacaatttgtgcagaatttgctgttcttagaatgttctcacaaaatgcagatggt
agatgtgtttttgtaacaccactggaacccctagcccaacagatgtacacagattggtac
agtaagtttggactgcagcttggaaaaaaagtggttgttctaactggtgaaactggcact
gatttgaaactactcgcaaagggtaatattattatcagtacacctgagaaatgggatgtg
ttgtcacgacgatggaaacagaggaagaatgtacagaatataaacttatttgttgtagat
gaacttcatctgattggtggagatgttgggcctgtactggaggttatttgttcccgtatg
agatatatctcatcgcagttagagcggaacattcgtatcgttgctctaagctcctccctg
tctaatgcgaaggatgtatcacagtggctgggcgtgtctaccactggattcttcaacttt
caccctaatgtgagacccgtaccactagaacttcatattcagggtttcaacatcagtcat
aacatgtcgagaattatagctatggccaaaccgacataccaggggatacttagacatgcc
cccaaaaaaccagtgattgtgtttgtcccatcacgtaagcagactcgtctgacagctata
gatattctcacgtttagtgctgccgaaattcagacagagacggagacgccaaggagtcgg
ttcctacatgtggccgaggaagatattgcacccttccttgataaaatatcagataagaca
ttaaaagaaactctcagcaatggagtggcatatctgcacgagggtttgaacgagttggaa
cgtaaggtcgtagagcagctgttctctactggagctgtgcaagtacttgttgcgtcacgt
aacctgtcatggggaatgaacgtgtcagctcatctggttattatcatggacacacagtac
tatgatggtaaaacacactcgtacgaggattatcccgtaccagatgtgctgcagatgatc
ggtcgtgcaaaccgacctctcactgataatgaagggaaagctgtgatcttatgtcagagt
tcaaagaaagagttcttcaaaaaattcttgtatgaaccattaccagttgagagtcacttg
gaccactgtctacatgatcacttcagtgcagagattgttacgaagacaatagagaacaag
caggacgctgtggattatctgacgtggacgttcctgtaccgacgtatgacacaaaacccc
aactattacaatctacagggcatgtcacataggcacttgtctgatcatctctctgaactg
gtagaaaacacaattacagatctggaacagtctaagtgtattggagttgaagatgaaatg
gatgtctcaccacttaatcttggaatgattgctgcttactactacattaactatacaacc
atagagttattcagcatgtcgttgaatgcaaagactaaagttaaaggactgatagagata
gtctcaaatgctgcggagtatgaggagattcctataagacatcacgaggactcggtcctg
cgccagttggcgagtagactcccaaacaaactggctaacccgaaatataatgatccccat
gtgaagacaaatctgttacttcaggcacatttgtctaggatgcagctctcggccgaactt
cagtctgatactgaggaaattctgagcaaggctgtccggttgattcaagcatgtgtggac
gtactcagcagtaatggttggttgagcccagctctggctgctatggaattggctcaaatg
gtcacacaagcaatgtgggccaaggattcgtacttgaaacaacttcctcacttctcagct
gacattattaagaaatgtcaagaaggtagtattgagacgatatttgacatcatggagatg
gaggacgaggacagaaacaagcttctacagttcacagaggcacagatggccgacgtcgcc
aagttctgtaacagatatccaaacattgagatgacatatgaggtggctgagaaagatagt
atttcaagtgggtccacagtgaatgtacatgtacagttagagagagaggatgaagttaca
ggacctgttgttgctccattattcccccagaaacgtgaggaaggctggtgggtagtgatt
ggtgacacgaagaacaattccctcctgtccatcaagcgtttgacattgcagcaaaaagcc
aaggtcaaattagactatgtcgccccagcaccaggaaaatacaactacacattgttcttc
atgagcgatgcctacatgggatgtgatcaggaatacaagtttagtattgatgtcagagaa
ggggagagtagcagtgaaagtgacagtgattaa
DBGET
integrated database retrieval system
