KEGG   Ruditapes philippinarum (Manila clam): 132734704
Entry
132734704         CDS       T09557                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03020  RNA polymerase
rphi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132734704
  09124 Replication and repair
   03420 Nucleotide excision repair
    132734704
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rphi03021]
    132734704
   03019 Messenger RNA biogenesis [BR:rphi03019]
    132734704
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132734704
Transcription machinery [BR:rphi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     132734704
Messenger RNA biogenesis [BR:rphi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     132734704
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      132734704
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 132734704
NCBI-ProteinID: XP_060577481
LinkDB
Position
Unknown
AA seq 172 aa
MFYHVSLEHEILLHPRYFGPNLLNIVRQKLFSEVEGTCTGKYGFVIAVTTIDNIGAGMIQ
PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPADMEFD
PNSNPPCYKTKDEDVVIQQDDEIRIKIVGTRVDAKDIFAIGTLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttaccacgtgtcattagaacacgagattcttctgcatccgagatattttggacca
aatctattgaacattgtcagacaaaaactgttttctgaagttgaaggcacctgcactgga
aaatatggctttgttattgcagtaaccactatagacaatattggtgcaggaatgattcag
ccaagtcgcggttttgttgtttatccagtgaaatataaagcaatcgtgttccgtccattt
aaaggagaagtgcttgatgcagttgttactcaagtaaacaaagttggactgttcacagag
attggaccattgtcatgttttatttcgcgacactccatcccagcagacatggagtttgac
ccaaattctaacccgccatgctacaaaacaaaggatgaagatgttgtcattcaacaagac
gatgaaatccgaatcaaaatagtcggtaccagagttgacgccaaagatatatttgcaatc
ggcactttgatggatgattaccttggacttgtaagctga

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