Ruditapes philippinarum (Manila clam): 132735256
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Entry
132735256 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132735256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132735256
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132735256
Spliceosome [BR:
rphi03041
]
Complex A
U2 snRNP components
U2 related factors
132735256
Complex B
132735256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Peptidase_C107
Motif
Other DBs
NCBI-GeneID:
132735256
NCBI-ProteinID:
XP_060578176
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MAKEGRSYRRRSRSKSRDRKRKRSRSKERRRSRSKERRSKSRERKRSRSRERKRSRSRER
KRSRSRDRKRSRSRDRRRKDEKRRSRSRDRRKRGSKDRSKSKSPSRYGEGAIRVKDEPLD
KEEEQKRLEMEMQKRRERIEKWRAEKNKTKELLPINIAPPSKKWSLEDEDDDDEENEDDE
TKTDDDNEVDPLDAYMQSVNEEIKKPEHTPMDTNNSSSGKVTIITAVAKKKPDPTVQKGE
LMLNNTDLMEYSSEEEEEDLDSTMLNMIKKKKDLATTDHSKVYYAPFRKNFYVEVPELAR
MTPEETEELRTEMEQIKVHGKGCPKPVREWAQVGVSKKVLDCLKKNLFEKPTPIQAQAIP
AVMSGRDLIGIAKTGSGKTLAFLLPMFRHILDQPELDDEDGPIGFLRIPTAEILLKIKTD
AQKFYEKPLGILCRVGDRNKGGLWKKIAELKKGCEVIVCTPGRMIDMLAANNGRVTNLRR
CTYVVLDEADRMFDMGFEPQVNRIIDNIRPDRQTVMFSATFPRQMEALARKILTKPIEIQ
VGGRSVVCKDVEQHVAILEEDQKFFKLLELLGQYQEDGGVIVFVDKQEHADDLMKDLMKH
SYPCMSLHGGIDQYDRGSIINDFKNGDIKLLIATSIAARGLDVKHLMLVVNYDCPNHYED
YVHRCGRTGRAGNKGTAFTFITPEQVRHAGDIIKALELSEAPIPDNLKNWWESYKKQAEA
DGIKIKSSSGFHGKGFKFDESEAQLVNDRKKLQKAALGLVDSDEEDPNEDIEQQIEDMFA
SKRRVTDVSKSSLPQMVRIPIAGGIMTGPQGKMGANNQMKLEMAKRLAAKINFNKNLGQE
AQDITQQATKAIFQDGVSAPQVASKTIAEQMAEKINAKLGYTPQIEDDKELEQDTFKRYE
EELEINDFPQTARWKVTSKEALAQICEYSEAGITVRGTYFPPGKQPKEEERKLYLAIEAT
SEMAIQKAKKEVTRLIKEELIRLQNSYQPINRARYKVV
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagaaggaagatcctatagaagacgatctagatctaaatcaagagacaggaag
cgaaaaagatccaggtcaaaggaaaggagaaggtcaaggtcaaaagaaagaagatcaaag
tcacgagagagaaaacgttcaagatctcgtgaaaggaaaaggtcaagatctagagaaagg
aaaaggtcaaggtccagagaccgtaaaagatctaggtcaagagacagaagaaggaaggat
gagaagagaaggtcaaggtcaagagacagaaggaaaaggggttctaaagatagatcaaag
agtaaatcaccatcaaggtatggtgaaggagctataagagtcaaagatgaacctcttgat
aaggaagaggaacagaaaagacttgaaatggaaatgcaaaagcgacgggaaagaatagaa
aaatggcgagctgagaaaaacaagacaaaggagcttttgccaatcaatatagctccaccg
tccaagaaatggagtcttgaagatgaggatgatgatgatgaggaaaatgaggacgatgag
acaaaaactgacgatgataatgaagttgatccactcgatgcttatatgcagagtgtgaat
gaggaaataaagaagccggaacatacaccgatggatacaaataatagttccagtggtaaa
gttactataatcacagctgtagccaagaagaaacctgatcctacagtacagaaaggagaa
cttatgctcaacaacacagatctaatggagtactcatcagaggaagaagaagaggatctc
gactccacgatgctgaacatgatcaagaaaaagaaggatctggccacaactgaccacagt
aaagtgtattatgctccatttagaaaaaacttctatgtggaagttcctgaactagcaagg
atgacaccagaagaaactgaagaattaagaacagagatggaacaaattaaagtgcatgga
aaaggctgtcctaaaccagtcagagaatgggcacaagttggtgtcagcaaaaaggtttta
gattgtctcaaaaagaacctttttgagaagccaacacccattcaggcacaggcaatacct
gcagtaatgtcaggcagggatctgattggtatagccaagactggaagtggtaaaacactg
gcgtttttactaccaatgtttagacatatactggatcaaccagagctagatgatgaagat
ggacctataggtttcctgcgcattccaactgctgaaattttattaaaaataaaaacagat
gcccaaaaattttacgaaaaacccctgggtattttatgtcgtgttggggatcggaataaa
gggggtctttggaaaaagatcgcagaattaaaaaaaggctgcgaggtgattgtgtgtaca
ccaggcagaatgattgatatgttagcagcaaataatggaagggtaacaaatttacgaaga
tgtacttatgtggtactagatgaggccgacagaatgtttgatatgggatttgaacctcag
gtaaatcgtataatagacaacatacgacccgaccgtcagacagtcatgttttcagccact
ttcccgagacagatggaagccttggcgagaaaaatattaaccaaacctatagaaatacaa
gtaggtgggaggagtgtggtgtgcaaagatgttgagcaacatgtggcaattcttgaagaa
gatcagaaattttttaagttattagagttactaggtcagtaccaggaggatggtggggta
attgtgtttgtagacaaacaagagcatgccgatgatctgatgaaggacctaatgaaacac
tcttatccctgtatgtcactacacggtggtatagaccaatatgatcgagggagtatcatc
aacgatttcaaaaatggagatatcaaactattgatagccacttctatagcagctagaggt
ttggatgttaaacatttgatgcttgttgtaaactatgattgtcctaaccactatgaagac
tatgttcacagatgtggacggacagggagagccggaaacaagggaacagcatttacattt
atcacaccagaacaagtccggcatgctggtgacattatcaaagctttggaattatcagaa
gctcctatacctgacaatctgaagaactggtgggaatcttacaagaaacaagctgaggct
gatggtattaaaatcaaaagtagctctggtttccatggtaaaggattcaagtttgatgaa
tctgaggcacagctagttaatgacaggaagaaattacagaaggcagcacttggtttggtg
gattctgacgaggaggacccgaatgaagatattgagcagcagatagaggacatgtttgca
agtaaaagaagagtaacagatgtttcaaaatcctcactcccacagatggttcgtattcca
atagctggaggtataatgacaggtcctcaaggcaagatgggagcaaataaccagatgaaa
ttagagatggcaaagaggcttgcagcaaagataaactttaacaagaatctaggtcaggag
gctcaagatattactcagcaggccactaaagctattttccaggacggggtgtctgcccca
caagtggcttcaaagacaatagctgagcagatggcagaaaagatcaatgctaagttaggc
tacacgccacagattgaagatgataaggaattagaacaagatacgttcaaacgttacgag
gaggaattagagataaatgacttcccacagactgctagatggaaggtcacatcaaaggag
gcccttgctcagatctgtgaatattctgaggctggtattacagtaaggggtacatatttc
cctccggggaaacaaccgaaagaagaggaacgtaaactgtacctggctattgaagctact
agtgaaatggctatacagaaggcaaagaaagaagttacaagactaataaaggaggaacta
atccgtctgcaaaattcctaccagccaatcaacagagcccgatacaaggttgtgtga
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integrated database retrieval system
