KEGG   Ruditapes philippinarum (Manila clam): 132735476
Entry
132735476         CDS       T09557                                 
Name
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    132735476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132735476
Enzymes [BR:rphi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     132735476
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     132735476
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DUF3802
Other DBs
NCBI-GeneID: 132735476
NCBI-ProteinID: XP_060578412
LinkDB
Position
Unknown
AA seq 830 aa
MAENRYLTGYAKLGTSSCKKCKQKIDKGALRIAKLVSNPFSEDAGDMKQWFHPDCVFEQF
VRARATTKKIEDPDDLEGFSDLEQADKDAILKLIKDFQARTSTPGKKKTPKKATPAKPKP
ETSSTPIKQEPKPGSSSESAGASNGSGPVSTSGGKDDSFREFRRLCADIAEENSYTGKTA
IVKKFITKGSSGDGYEGNLYLLLKLLLPGVVKSVYNLNNKQLVKLYSQVFQTNQKAMLED
LDQGDVAETVKVFFEQSKVLPPQKKCALTIQEVNSFLEDLTKVTKEDDQEKILTKIAQRC
TGNDLKMVIRLIKHDLRINAGAKHILDALDPNAYAAFQASRDLRDVVERVIENKGNGEKP
GLGKKLSVRASLMTPVLPMLAEACRSVGQAMKKCPNGFYAEIKYDGERVQLHKKGSDFQY
FSRSLKPVLPHKVSHFKEFIPKAFPSGDDLILDAEVLLIDTKTGIPLPFGTLGKHKKEQF
KEANVCLFIFDCLHLNGENIMDRPIKERRKILQKEMIEIPNRILFSEMKHITEEDDLTDM
MTRVFQEGLEGLVLKDVNSIYEPGKRHWLKIKKDYLNEGQMADSADLVVLGAFYGTGNKG
GMMSVFLMGSYDPNTDQWCTVTKVGNGFDDATLEKLQKELKMVKISKNSSKVPDWLNVKK
NMIPDFVSADPKSAPVWEISGAEFSKAEVHTADGISIRFPRVTKVRDDKSWKEATDLPRL
KDLFKKSKDTSDIVIPGTKKGKGPGKSPAKKGKSSSGSDTDVNDDSDANSNATPVKSKST
SVSSTPGESSTPGGTVGIAKYFSPKKEQNSPTKAIKRTNENGNESSPAKK
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggcagaaaatagatatttgactggttatgccaaattagggacgtcaagttgtaaaaaa
tgtaaacagaagattgataaaggagccctgagaatagcaaaacttgtctcaaatccattc
tccgaggatgccggggacatgaaacaatggtttcatcctgattgcgtgtttgagcaattt
gtacgtgcacgagctacaacaaagaagatcgaggatcccgatgatttagaaggattttcc
gatttagaacaggctgataaagatgccattcttaaactgatcaaagattttcaggctaga
actagtaccccagggaaaaagaaaacaccaaagaaagctacaccagcaaaaccgaagcca
gaaaccagcagcacaccaataaaacaggaaccaaaacctggctcctcatcagaatctgca
ggagcaagcaatggttctggtccggtaagcacatcaggtggaaaagatgactcatttaga
gagttccggcgcctttgtgccgacattgccgaagaaaacagttacacaggaaaaacagct
attgtaaaaaaatttatcacaaaagggtcaagtggtgatggttatgagggcaacctatat
cttttattgaaactactgttacctggtgtagtgaaaagtgtgtataacttgaacaataaa
cagctagtcaagctgtatagtcaggtattccaaacaaatcagaaagcaatgttggaggat
ttagaccaaggagatgtggcagagactgtgaaggttttctttgagcagagtaaagtcctt
cctccacagaaaaaatgtgctcttacaatacaagaggtgaacagttttctagaggacttg
acaaaggtgacaaaggaagatgaccaggagaaaatattgaccaaaattgctcaaagatgt
actggaaatgatttgaagatggtgattcgactgattaagcatgatctcagaataaatgca
ggggccaaacacatactagatgcccttgacccaaatgcgtatgcagcattccaggcttca
cgtgaccttcgtgatgtggtggagagggtcattgagaacaaaggaaatggtgaaaaaccc
ggtctaggcaagaaattgtcagtgagagcttcattaatgactccagtattacccatgctg
gcagaggcatgtagatcagtgggccaggctatgaagaaatgtcccaatggtttctatgca
gagataaagtatgatggagagagggtacagcttcacaagaaaggatctgactttcagtac
ttcagtagaagtcttaaacctgtactaccacataaggtttcacattttaaagaatttatt
cctaaagcgtttccatctggggatgatcttatacttgatgctgaagtacttcttatcgac
acaaaaactgggatacctctaccatttggcacccttggtaaacataaaaaagaacagttt
aaagaagccaatgtttgtttattcatatttgactgccttcatctgaatggagaaaatatt
atggatagaccaattaaagaaaggagaaaaattcttcagaaggagatgattgaaatacca
aacagaattttgttttctgaaatgaaacatattactgaggaagatgatctcaccgatatg
atgacacgggtgtttcaggaaggtctggaaggtcttgtacttaaagatgtcaatagtatt
tatgaacctggaaagcgtcattggttgaagataaagaaggattatttaaatgaaggacag
atggctgactcagcagatttagttgttcttggagcgttctatggaactggcaataaaggt
gggatgatgtctgtatttctaatggggtcatatgacccaaacactgaccaatggtgtact
gtgaccaaagtagggaatgggtttgacgatgccactttagaaaaactgcaaaaagagctc
aagatggtgaaaatcagcaagaattctagcaaggtcccagactggcttaatgtgaagaag
aatatgataccagattttgtgtcagcagacccaaaaagtgcaccagtctgggagatttca
ggagcggaatttagtaaagcagaggttcatacagcagatggtatatctataagatttcct
cgtgtaacgaaggttagagatgataaatcatggaaggaagccactgatttaccaagacta
aaggatttgttcaagaagtcaaaagacacatcagacatcgttatcccaggaaccaagaag
ggtaaagggcccggcaaatctccggctaagaaaggcaaatcttccagcggcagtgataca
gatgtaaatgatgacagtgatgcaaacagcaatgcaactcctgtgaaatccaaaagtaca
tcggtgtcatctacacctggcgagtcttcaacacctggtgggactgttggaatagccaaa
tacttttcgccaaaaaaggaacaaaattctccaacaaaagcaatcaagcggaccaatgag
aatggaaatgaatcaagtccagctaagaaa

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