Ruditapes philippinarum (Manila clam): 132735656
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Entry
132735656 CDS
T09557
Name
(RefSeq) F-box/WD repeat-containing protein 1A-like isoform X1
KO
K03362
F-box and WD-40 domain protein 1/11
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04120
Ubiquitin mediated proteolysis
rphi04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132735656
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
132735656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132735656
03036 Chromosome and associated proteins [BR:
rphi03036
]
132735656
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132735656
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
132735656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_C
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-TrCP_D
Beta-prop_SCAP
WDR55
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
F-box-like
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
F-box
NBCH_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IP5PC_F
Beta-prop_DCAF12
WD40_like
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_VPS8
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_WDR11_2nd
Beta-prop_WDR19_1st
KNTC1_N
F-box_5
Beta-prop_LRRK2
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
132735656
NCBI-ProteinID:
XP_060578618
LinkDB
All DBs
Position
Unknown
AA seq
518 aa
AA seq
DB search
MTSMESEMETCSSSVERLDIKKAETIAHIKPVGSVVDEQPSPQFLKERDGCVKLFDNWSE
NDQVLFIEHLLSRMCHYQHGQINAFLKPMLQRDFISALPAKGLDHIAENILSYLDAKSLC
SAELVCKEWYRVISDGMLWKKLMERMVRTDNLWRGLADRRGWGQYLFKPRQGEVPKDHKF
YRSLYPQIIQDIDRIETNWRTGRHTLQRIHCRSETSKGVYCLQYDDLRIVSGLRDNTIKI
WDRNSLECMQVLTGHTGSVLCLQYDNNIIISGSSDSTVRVWDVRTGEMLNTLIHHCEAVL
HLRFCDGIMVTCSKDRSIAVWDMQSPTEINLRRVLVGHRAAVNVVDFDDKYIVSASGDRT
IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE
LVRCIRFDNRRIVSGAYDGKIKVWDLAAALDPRAPAGTLCIKTLVQEHSGRVFRLQFDEF
QIVSSSHDDTILLWDFLNVPVTDTPVRSPSRNAYKLVP
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatggaaagtgagatggagacatgctcttcatctgttgagcgtttagatatt
aaaaaggcagagacaattgcccacataaaacctgtaggctctgtagttgatgagcaacct
tcaccccaatttctcaaagaacgtgatggatgtgtaaaactgtttgataattggtcagaa
aatgaccaagtgttgtttattgaacatctattgtcccgtatgtgtcattatcaacatgga
caaatcaatgcatttctcaaacccatgctacagagagattttatctcagcacttccagcc
aaaggattggatcacatagcagaaaacattttgtcatatttggatgccaaatcattatgt
tcagcagaattagtttgtaaagaatggtaccgagtgatctcagacggtatgctctggaag
aagctcatggaacgcatggtacgaacagacaacttgtggcgaggccttgcggaccgacgc
ggatggggtcagtacctgtttaaacctcgccagggagaagtaccaaaagatcacaaattc
taccgaagcctttacccacaaataatacaagatatagatagaatagaaacaaattggcgg
acaggtagacatacattacaacgtatacactgtcgaagtgaaactagtaaaggtgtatac
tgtctacagtatgatgatctgaggatagtgagtggacttagggacaatacaataaagatt
tgggatagaaactcattagaatgcatgcaggtactgaccggtcacactgggtcagtactg
tgcttgcagtacgacaacaacatcatcatctctgggtcaagtgactccacggtacgcgtg
tgggacgtgcgtacaggagaaatgctgaacaccctcatccaccattgtgaagctgtactt
catcttagattctgtgatggtattatggttacatgttcaaaggatcgttcaatagcagta
tgggacatgcaatctccaacagaaatcaatctgagacgtgtgttggttggccatagggca
gctgtaaatgttgtagattttgatgataaatatatcgtatcggcatcaggtgataggact
atcaaggtatggagtacatcaacatgtgagtttgtacggacattgaatggtcacaaacgt
ggaatagcttgtttacaatatagagacagattagtagttagtggtagctcggataataca
ataagattgtgggatattgagtgtggcgcatgtttacgtgtgctagaaggccatgaagag
ttggttagatgtatacgttttgataatagaaggattgttagcggggcatatgatggtaag
attaaagtatgggacctggcagcagcattggaccctcgggcaccggcaggcactttgtgt
atcaaaacccttgttcaggaacattcgggccgcgtgttccgtctccagtttgatgagttc
cagatagtgagcagctctcacgacgacacgatacttctgtgggattttctcaacgtaccc
gtcacagacacacctgtacgatcaccatcacgcaatgcatataagttagttccataa
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