Ruditapes philippinarum (Manila clam): 132735787
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Entry
132735787 CDS
T09557
Name
(RefSeq) coatomer subunit beta'-like isoform X1
KO
K17302
coatomer subunit beta'
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132735787
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rphi04147
]
132735787
Membrane trafficking [BR:
rphi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
132735787
Exosome [BR:
rphi04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
132735787
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
PEP5_VPS11_N
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
132735787
NCBI-ProteinID:
XP_060578765
LinkDB
All DBs
Position
Unknown
AA seq
1016 aa
AA seq
DB search
MPLRLDIKRKLSARSDRVKTVDLHPTEPWMLASLYNGNVHIWNFESQQLIKSFEVCDLPV
RTARFVPRKNWVITGSDDMHVRVYNYNTLERVHQFEAHSDYIRAIAVHPTQPFFLTSSDD
MLIKLWDWEKKWTCTQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSPNPNFT
LEGHEKGVNCVDYYTGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVAFHPE
LPIILTGSEDSTVRIWHANTYRLESTLNYGLERVWTIACQRGSNNVALGYDEGSIIIKLG
REEPAMSMDSSGKIIWAKHSEVQQANIKAMGDQEIKDGERLALAVKDMGACEIYPQSIQH
NPNGRFVCVCGDGEYIIYTAMALRNKSFGSAQEFVWSNDSSVYAIREGSSMVKIFKNFKE
QKSFKPDFGCEGIYGGNMLGVRSVSGLAFYDWDTTELIRRIEITPKNVFWSENGELMCLS
TEDSFFILKYNPDAVEKATENKELVTEDGIEEAFDVVGETEEIVKTGTWVGDCFIYTNAV
NRLNYYVGGEIVTIAHLDRVMYILGYIPKDNRLYLGDKELNVISFSLLLSVLEYQTAVMR
QDFETADKVLPTVPREHRTRVAHFLEKQGFKSQALAVTCDPEHKFELSVNLGDLKTAYQI
AKELEGEQKWKQLAELAIQKCEFGLALECLHQAQDFGGLLLLASSAGNAEMLGKLGESAE
KGGQNNVAFLSYFVLGQLEKALDVLVNTGRLPEASFFARTYLPSHVSRIVKLWRESLHNV
KAANSLADPAEYENLFPGFAETVKCEQFLKPQRMRRYPARTYPQVPANSDRVPLEEMAAA
EEKGAFSYQPPRPEGDDDEFVEAPQSQQKSEDKDLDWDSDPETETAPTEPKPSEPVKPEP
TEQEEVVNEASEEGWGSDSDIEDYDETDPNIDQSHDQSCDITSVNTEHVPHDSTLYTPVE
EAKAVTEPEQPQLGEDEMADLEKELELDLKNLDVNDAGESGETNQDIDLDENLLED
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgagattagatatcaaacggaagttgtctgcacgatctgatcgtgtgaagaca
gtcgatctccatccaacagagccatggatgctggctagtttatataacggaaatgtccat
atatggaattttgaatcacagcaactgatcaaatcatttgaagtatgtgatctgccagtt
agaacagctaggtttgtgccaaggaaaaactgggtcatcacaggttctgatgacatgcat
gtgagagtttataattacaacacattagagagagtacatcagtttgaagctcatagtgac
tatattcgagccatagcagtccacccgacacagcctttcttcttaacaagtagtgatgac
atgttgatcaagctttgggattgggagaaaaaatggacatgtacacaagtttttgaaggg
catacacactatgtgatgcagattgttataaacccaaaagacaacaacacatttgctagt
gcgtcactggacagaactgtcaaggtgtggcagctaggttcaccaaatcccaattttaca
ctagaaggtcatgagaagggagtgaactgtgtagattattacacagggggagataaacca
tacctaatttctggtgccgatgacaggctggtgaaaatctgggattaccagaacaaaaca
tgtgtgcaaacattagagggacatgcacagaatatttctgcagtagctttccatcctgaa
ctacctatcatacttactggatcagaagatagtacagtacgaatttggcatgctaataca
tacaggcttgagtcaacattaaactatggtctagagagggtatggacaatagcttgtcag
aggggctctaataatgtggcacttggttatgatgaaggcagtatcattataaagcttggt
cgtgaggagccagcaatgtccatggactctagtggtaaaattatctgggctaagcattca
gaggtgcagcaggctaacattaaggccatgggtgaccaagaaatcaaggacggtgagagg
ctggctctagctgtgaaagacatgggagcatgtgaaatatatccacaaagtatacagcat
aatcctaatggaaggtttgtatgtgtgtgtggagatggtgaatatattatttacacagct
atggcactcagaaacaagagctttggctctgcacaggagtttgtctggagtaatgactcc
tcagtgtacgccatcagggaggggagcagtatggtgaaaatcttcaaaaactttaaggaa
cagaaatcattcaagccagactttggctgtgaaggtatatatggtgggaacatgctaggt
gtacgatctgtcagcgggctggcattctacgactgggacaccactgaacttattagaaga
atagaaattacacctaaaaatgtattctggagtgagaacggagagttgatgtgcctatct
acagaagattctttttttatcctcaaatacaatcctgatgcagtagagaaggctacagaa
aataaagaacttgttactgaagacggcattgaagaggcatttgatgttgttggagaaaca
gaagagatagtaaagaccgggacctgggttggagattgttttatttatacaaatgctgtc
aacagactgaattactatgttggtggtgaaattgttactatagctcatttagatagagta
atgtatatattagggtatataccaaaggataacagactgtacctgggtgataaagaattg
aatgttataagtttctccctgctcttgtcagtactagagtatcagaccgctgttatgaga
caggattttgagaccgctgacaaggtgttacctacagtcccgagagaacatagaacccgt
gtagctcatttccttgaaaaacagggatttaaatcgcaagctttagcagtaacgtgtgat
ccagaacacaagtttgaactttctgtaaatttaggggacctaaaaacagcctatcagatt
gctaaggaactagagggtgaacaaaaatggaagcaactggcagaactagccatacagaag
tgtgagtttggtctggcgttagaatgtctacatcaggcgcaggactttggtggtctgtta
ctactggcgtcgtctgctggtaacgctgaaatgctaggaaaactcggagagtctgcggag
aaaggaggacagaacaatgttgcgttcctatcatactttgtgctcggacaattagagaag
gctctggatgtactggtcaacactggaagattaccagaggcatcattctttgccagaact
tacttacctagtcatgtatcaagaatagtaaaattatggagagaatcactacataatgta
aaagctgctaattcattagccgacccagcagagtatgaaaatctgttccctggttttgcc
gagaccgtaaaatgtgaacaattccttaaaccacagagaatgagacggtacccagcacgg
acttatcctcaagtacctgcaaattcagatcgagtaccgctagaagagatggccgctgcg
gaggagaagggtgcatttagttaccaacccccacgacctgaaggggatgatgatgaattc
gttgaagccccacaatcacaacaaaaatctgaggataaagatttagactgggacagtgac
cctgaaactgagacagcaccaacagaaccaaaacctagtgaaccagtcaaaccagaacct
actgaacaggaagaggttgttaatgaggcatccgaggaaggttggggatctgactcggac
attgaggattatgatgaaactgatccaaatatagatcagtcacatgatcagtcatgtgac
atcactagtgtgaacactgaacatgttccacatgacagtacactgtacacacctgtggag
gaggctaaagcagtaacagaacctgaacagcctcagttaggagaggatgagatggccgac
cttgaaaaagaattagaacttgacctgaaaaatctcgatgttaatgatgcaggggaatca
ggggagactaatcaggatatagatttagacgaaaatttgctggaagattga
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integrated database retrieval system
