Ruditapes philippinarum (Manila clam): 132736385
Help
Entry
132736385 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup107-like
KO
K14301
nuclear pore complex protein Nup107
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132736385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132736385
03036 Chromosome and associated proteins [BR:
rphi03036
]
132736385
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
132736385
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132736385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
132736385
NCBI-ProteinID:
XP_060579488
LinkDB
All DBs
Position
Unknown
AA seq
957 aa
AA seq
DB search
MDMSRDESFAAQRHGRRSLQTFEAMLDGGSPAVRDQQISKVFKRRSTALNVQKSIQLLDE
SVGSPSTKGWRTPGGTLKHTSYTPRLLSSGTKFDVSTRFGPTPKKTPQGNKSFQRSFHDD
SFQSSFHNTSGLRPLQEEDMTEEITTTNVGLLLEEDPGVSASKGLFEDFLQCHRAHPSEA
ELFLLVEEYQKTCKEQVVMLKKLVTHASRQEEKMRKTFIVLHQLYEEEATWKLIRSLFKD
RHETCMREECMMEEGEEDIQVVQGIYQSDEKIVNALFDRDQSVREAQLVVDWLESCAQDD
CENFADNIKFFSDRAVGYENARHRLQNQQTGVPAGAERNLITELDPDAPIRQNRLLDDLD
KEDEDRLLQYIFVCLRAGQLEKAQKMCSDCGQAWRAATLEGWKLFHDPNFEGVGPEGQRR
AVIGNPHRDIWKTVCWNMSQDARVGIYEKAIYSALSGNLRGVLPVCKSWLDYVWAYFRVF
VDRKVEDEIRLKTTLSRSLAILPGEYWEKNLTTRSVFKEIEANEVMQKESMGLYHLIQKY
VIVGDISGLLDLLYERVRQQGQDVSLHALRFMAHFVLFLRTSEQNTKEELCNSILECYVE
RLIRDKHYNLIAYYVSKLPLNAQVHWYALFLEGITNKDERQHYLDLAEEAGLDLAAVTKK
VVENIRMKSDVDFTSLHEAQESVDTVISEEDRLKIEAIDWLVFDIGQRAEALKQANAVMR
TFIALKKIDAARAVFEKLPPDSVDVVHRTWLQQTGTTMLPLEDKNAVREYLCFKAYLDAM
ESFNDWIQHYHHGQPTQPAPPEGGSFTDRVAYEHRMKQYDQERERWHHNLLMQTQTTKDH
IYNVLLFADGGWMVDQAEEEGEESIADRPDSDPLRHEQMDCLRHLVLPGLVFLLQTVLHT
SEQYQECVRLADILAAEQNKLYQVFRQDELQRVLHLLRESSLKLLDQGRGPLGYEHN
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggacatgtctagagatgaatcttttgctgcacagcgacatggcaggagaagtttacag
acatttgaggccatgttagatggtggttctccagctgtgagagaccagcaaatcagtaaa
gtatttaaaaggagaagtacagcactcaatgtacagaaatcaatacagttattagatgag
agcgtaggatccccatccacaaagggatggagaactccgggtggaacactaaaacacact
tcatacaccccacgcttgttgtcatcaggaacaaagtttgatgtttcaacaagatttgga
ccaactccaaaaaagacgcctcagggaaacaaatcatttcaaagatcttttcatgatgac
agttttcaatcatcattccacaacacatctgggctgagaccattacaggaggaggacatg
actgaggagataacaacaacaaatgttggcctacttttagaagaggatcctggagtctca
gcatccaaaggtttgtttgaggatttcctacagtgccatagagctcatccgtcggaagca
gaactatttcttctggtggaggaatatcagaagacatgtaaagaacaagttgttatgttg
aaaaaacttgtcacacatgcctcaagacaagaggaaaagatgagaaagacgtttatagta
ttacaccagctgtatgaggaggaggcgacatggaagctgatcaggagtttgttcaaggac
agacatgagacttgtatgagggaagagtgtatgatggaagagggggaggaggacatacaa
gttgtacagggtatatatcagagtgatgaaaagatagtgaatgccttgtttgatagagac
cagtctgttagagaagctcagttagttgtggactggctggagagttgtgcccaggatgat
tgtgagaattttgcagataatatcaagtttttctctgacagagctgtaggatatgagaat
gcccgccataggttacagaatcaacagactggggtaccagctggtgcagagagaaatctt
attacagaactcgaccctgatgcaccaataagacaaaacaggcttctagatgacctagac
aaagaagatgaagatcgcttattgcagtatatttttgtgtgtttacgagcagggcaactt
gaaaaggcacagaaaatgtgctctgactgtggtcaggcatggagggcagccactttagag
ggatggaaattatttcatgatccaaactttgagggtgttggaccagaaggtcagagacga
gctgttattggtaatccacatcgagacatttggaagactgtgtgctggaatatgtcacaa
gatgcaagagttggtatttatgagaaggcaatttattctgcattgagtggtaacctacga
ggtgtactgccagtatgtaagtcctggctggactatgtgtgggcatatttccgtgtgttt
gttgaccggaaagtggaggatgaaatcagattgaagacaacattgagccgatctctagcc
attctaccaggagaatactgggagaaaaatctgacaacaagatctgtgttcaaggagata
gaagctaatgaagtgatgcagaaagaatcaatgggtctgtatcatctgatacagaaatat
gttattgttggagacatttctggattattggatttactgtatgaacgtgtgaggcaacaa
ggacaagatgtctcgttacatgctctcagatttatggctcattttgttctctttctcaga
acctcggagcaaaatacaaaggaggagttgtgtaattcaatattagagtgttatgttgaa
cgactgatcagagacaaacattataatctcatagcttactatgtatcaaagttaccactg
aatgctcaagtccattggtatgctctcttcttagaaggtataactaacaaggatgagcgt
caacattacctggacctcgcagaggaagctggtcttgatctagcagctgtcacaaagaaa
gttgtagaaaatatccgtatgaaatcagatgtagactttacatcattacatgaagcccag
gagtctgtagacactgttatctcagaggaggacagactgaagatagaagctatagattgg
ttagtgtttgatattggccagcgtgctgaagctctcaaacaagccaatgctgtgatgaga
actttcattgcattaaagaagatagatgcagctcgtgcagtgtttgagaaattaccacca
gattctgtagatgttgtacatagaacctggctgcaacagactgggacaactatgttacca
ctagaagacaagaacgctgtcagggaatatctctgttttaaagcttatctggatgccatg
gaaagtttcaatgattggatccagcactaccaccatggacaaccgacacaaccagcacca
ccggagggtggatcattcactgatagggtagcttatgaacacagaatgaaacaatatgat
caagaaagagaacgatggcaccacaatttgctaatgcaaacacagacaaccaaagatcat
atatacaatgtgttactgtttgctgatggtggctggatggtggatcaagctgaggaggaa
ggagaggagagtatagcagacagaccagatagtgacccattacgacatgaacagatggat
tgtctacgtcaccttgtactaccaggtcttgtctttctgctacaaactgttctacatact
agtgaacaatatcaggaatgtgttcgtcttgctgacatcttagcagctgagcaaaacaaa
ctataccaggtgtttagacaagatgagttacagagagtgctacatcttctacgagagtcc
tccttgaaattgttagatcagggacgtggtcctctaggatatgaacataactaa
DBGET
integrated database retrieval system
