Ruditapes philippinarum (Manila clam): 132736861
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Entry
132736861 CDS
T09557
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132736861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132736861
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132736861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_27
TPR_HPS5_insect
DUF416
Motif
Other DBs
NCBI-GeneID:
132736861
NCBI-ProteinID:
XP_060580063
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MRLDAAAVRALNLLPSSTEGGNKNQCLLGLLNRCRTAQGQRLLGHWVKQPLVDKNRIEER
LNIVEAFVEDTELRQMLFEDQLRRIPDFQRLAKKFQRKKASLQDVYRVYQAIDKMPYLLE
TLEKTDSQHKSLLMDIFSNPLKELLMDFAKFQEMVEATMDLDQVENHEFVIKADFDEGLT
ALKEKMDKLEDNIKGQLNKVCMDLGLEPNKVLKLESNAQLGYFFRVTLKEEKVLRNNKNY
ITIDTKTNGVRFHNKAVRELNTDYLEAKEEYGEQQKSVVNEVIGIAAGYVEPMLIINDIL
AQLDVLVSFSQVTTCAPIPYVRPTVLEKGSGIIKLKETRHPCLEMQDDIAFIPNDIQFEK
DKQMFHIITGPNMGGKSTYIRSVGVTVLMCQLGCFVPCSEADVTIVDSILARVGAGDSQL
KGVSTFMAEMLETASILRSATEDSLIIIDELGRGTSTYDGFGLAWAISENIATQLKSYCL
FATHFHELTALADKVPTVNNLHVTALTSNDTLTLLYRVKPGVCDQSFGIHVAELAHFPKH
VIQFAKEKACELEDYQCISLSGTDLEGEDEPAVKKRKLVKQEGEELITEFLKKAREIPVA
SLSKEEVAKKIESLKTDLKAKNNSYIEDILARKS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagacttgatgctgccgctgttcgagccctgaatctactccccagttctactgaagga
ggcaacaagaatcagtgtctacttggtcttctaaatagatgtcgcactgcacaaggtcaa
aggttactaggtcactgggtcaaacagccattggtggataaaaatagaatagaggagagg
ctaaacatagtcgaggcatttgttgaagatacagagcttagacagatgttgtttgaagat
caattaagaaggataccagatttccagagattagctaaaaaattccagaggaaaaaagct
tcattgcaggatgtgtacagagtttatcaggcaattgataagatgccatatctactggaa
acattggagaaaactgacagtcagcataaatcacttctcatggacattttcagcaatcct
ctcaaggagctgttaatggactttgccaagtttcaagagatggttgaagccaccatggat
cttgaccaagttgagaaccatgagtttgtcataaaagccgactttgatgagggtctgaca
gcattaaaagaaaagatggacaagttagaagacaatattaaaggtcaacttaacaaggta
tgtatggatcttggtttagagcccaacaaagtgttgaagttagaaagcaatgctcagtta
ggatatttctttagagtgaccttaaaggaagagaaagttttaagaaacaacaagaactat
atcaccatagatacaaagaccaatggtgtgaggttccataacaaggcagtgagagaactt
aatacagattacctagaggcgaaggaagagtacggtgaacaacagaaaagtgtggtgaac
gaggttattggaattgcagctggatatgtagagcctatgttgattattaatgatatattg
gcacagttagatgtattggtgagtttctcccaggtgacaacatgtgctccaataccatat
gtcagacctactgtactggaaaaaggcagtggtattataaaattgaaggaaacaagacac
ccatgtctggagatgcaagatgatatagcatttatacctaatgatatacagtttgaaaaa
gataaacagatgtttcacatcataacaggaccaaacatgggaggaaaatctacatacatt
cgctcagttggtgttacagtactgatgtgtcaactgggatgttttgtgccatgtagcgag
gctgacgtcactatagttgacagtatacttgctagagtgggtgctggggacagtcaactg
aagggagtgtccacatttatggcagaaatgttagaaacagcttctatactaaggtcagcg
acagaggattcattgatcatcatagatgagttagggagaggtacgtctacatatgatggt
tttggactggcatgggctatctcagaaaatatagcgacacagttgaagtcttactgtctg
tttgccacccacttccatgagttaactgcccttgctgataaagtgcccactgtgaataat
ctacatgtaactgccttgactagtaatgatacattaacgttgctgtacagagttaaacca
ggtgtatgtgaccagagttttggtatccatgtggcagaattggcacattttcctaaacat
gttattcagtttgccaaggagaaagcctgtgagttagaagattatcagtgtatcagtcta
tccggtacggaccttgaaggggaggatgaaccagccgttaaaaagagaaaacttgtaaaa
caggagggagaagagcttattacagagtttctgaagaaagccagggaaattccagttgct
tcccttagtaaagaagaagttgccaaaaagatagaatctcttaaaacagatcttaaagct
aaaaacaattcttatattgaagatattcttgctcgtaaaagctga
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