Ruditapes philippinarum (Manila clam): 132737036
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Entry
132737036 CDS
T09557
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03420
Nucleotide excision repair
rphi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132737036
09124 Replication and repair
03420 Nucleotide excision repair
132737036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132737036
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132737036
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
132737036
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
132737036
TCR (transcription coupled repair) factors
Cul4-CSA complex
132737036
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
132737036
NCBI-ProteinID:
XP_060580249
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MAFNYFVTAHKPTAVNACVTGNFTSSDDLNLIIAKNSRLEIYVVTPEGLRPVKEVGIYGR
IAVLELYRPPGELKDLMFVLTTKYNAMILECQHDGEAIEIITRAHGNVQDRIGRPSETGI
IGIIDPLCRVIGLRLYDGLFKVIPLDRDNKELKAFNVRLEELTVIDIQFLHDCTTPTVIL
VHQDQHGRHVKTYEISLRDKDLSKGPWKQDNVETEACILIAVPSPFGGALIVGQESITYH
KGDQFIPIAPPAIKQSTITCCGKVDANGQRYLLGDMNGRLFMLLLEKEEKMDGSSTIKDL
KVELLGETSIAECITYLDNGVVYIGSRLGDSQLIKLNITPDEQGSYVQVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAYKEGSLRIIRNGIGIHEHASIDLVGIKGIWSLQVDSERY
DNMLVLSFVGQTRVLQLTGEEVEETEVSGFNSEQQTFLCANVFGNQIVQITPPAVRLINT
ATKKLVSEWSHPGGKNISLGSCNHTQVVVAAGSELFLLEIQAGEIKQVSTTVVEHEIACV
DITPQVEGQNKSDIVAIGLWTDISARILKLPSFESLHVEMLGGEIIPRSILMTTFEGIHY
LLCALGDGSLFYFHLNIHTCYLTDKKKVTLGTQPTVLRTFKSLSTTNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNHMCPLNSEGYPDSLAIANDNTLTIGTIDEIQKLHIRTIPLEESP
RRIAYQESSQTFGVISMRMDVQDGSTTAPTRTSASTHASSTSTSNNSKMVSTGTSMIGEH
SFGDEVEVHSLLIIDQHTFEVLHAHTLLQNEFATSLISAKLGDDPNTYYIVGTAMVNPEE
AEPKQGRIIVFHCQDGKVTQIAEEEITGAAYTLCEFNGKLLASVNSTVRLFEWRTAEKEL
KLECCHYNNIIALYLKTKGDFILVGDLMRSITLLLYKSMEGTFEEIARDCNPNWMTAVEI
LDDDIFLGAENSFNLFTCHKDSAATTDEERQNLQETGLFHLGEFVNVFRHGSLVMQHSFE
SSTPTQGSVLFGTVNGAVGLVTQLPPDFYHFLQDVQGRLAKVIKSVGKIDHSFWRSFHTE
RKTEVCTGFIDGDLIESFLDLSREKMAEVVQGLQIDDGSGMKRDANVDDLVKMVEELTRI
H
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcctttaattactttgtaactgcccacaaacccacagctgtcaatgcatgtgtaacc
gggaatttcacatcaagtgatgacttaaacctaattatagccaagaatagtcgccttgag
atatatgtggtaacccctgaaggtttacggccagtgaaagaagttggtatctatggacgt
attgctgtattggagctgtatcggccacctggagagttgaaagatcttatgtttgtatta
acaaccaaatacaatgctatgatattggagtgccaacatgatggtgaagctattgaaata
attacacgagcccatggtaatgttcaggatcgtattggacgaccatcagagaccggcatt
attggtataatagacccactatgtcgagtaattggactgagattatatgatggtttgttt
aaagttataccattagatagagataacaaggaactgaaagccttcaatgtgagattagag
gagctgacagtgattgacatacagtttctacatgactgtacaacacctactgtaatactt
gtacaccaggaccagcatggtcgacatgttaaaacatacgagatatcattacgtgacaaa
gatcttagtaaagggccttggaaacaggataatgttgaaacagaagcatgtattcttatt
gcagtaccatcaccatttggaggggcactaatagttgggcaggagtctataacctatcac
aagggagatcagtttatacccatagcacctcctgctataaagcaaagtacaataacatgc
tgtggtaaggtagatgcaaatggacaaagatatctcctgggtgatatgaatggtagattg
ttcatgttactgttagagaaagaggaaaaaatggatggttcatcaacaatcaaagatctg
aaagtagaactccttggtgagacaagtattgcagagtgtatcacatatttggacaatggt
gttgtttatataggaagtagactaggtgactctcaactcataaagttaaacattacacca
gatgagcaaggttcctatgtacaggtgatggagacatttacaaacctaggtcctatagtt
gatatgtgtgttgttgatctggaaagacaaggccaaggacagttggtgacatgttccggg
gcatataaagaaggatctctaagaattataagaaatggtataggtattcatgaacatgca
agcattgatcttgttggtattaaaggtatatggtcactacaggtagattcagaacgctat
gataacatgcttgtactatcttttgttggacaaacaagagttttacagttaactggtgaa
gaagtagaggaaacagaagtttctggcttcaactctgagcaacaaactttcctgtgtgct
aatgtgtttggtaaccaaatagtgcagataactccaccagctgttagattaatcaacaca
gcaacgaagaagttggtgagtgaatggtcgcaccctgggggtaagaatatctccctgggt
agttgtaaccatacacaggttgttgtagccgctggtagtgaactgttcctcttagaaata
caagctggagaaatcaaacaagttagtacaacagtagtagagcatgagatagcttgtgta
gacattacaccacaagttgagggacagaacaaatcagacattgttgctataggattgtgg
acagatatctctgccaggatattaaagctaccatcatttgagagtcttcatgtagaaatg
cttgggggagagattattccgaggtcaatattgatgacaacatttgaaggaatacattat
ttactgtgtgcactaggcgacgggtcactgttttactttcacctcaacatacatacttgt
tatctaacggacaagaagaaggtaaccctcggcacacagcctacagtactgaggacattt
aagtctttatcaactaccaatgtatttgcctgctcggacagacctactgtgatatattcc
agcaaccataaacttgtcttctctaatgtcaacctaaaagaggtcaaccatatgtgccct
ttaaactctgagggatatcccgacagtttggcaattgcaaatgataacactttaacaatt
ggaactatagatgaaatacagaaattacacattagaactattccccttgaggaatctccc
aggaggatagcataccaggagtcctctcagacatttggtgtgatctcaatgagaatggat
gtacaggacggttcaaccaccgcgccaacacgaaccagtgccagcactcatgcctcctcg
acatcaactagcaacaattctaagatggtttccacgggaaccagtatgatcggagaacat
tcgttcggagatgaggttgaagttcactcgcttctaattatagatcaacacacatttgaa
gtgttacacgctcatacgttgctgcagaacgagtttgctactagcctgatctcagctaaa
ctaggagatgatcctaatacatattatattgttggtacagccatggtcaaccctgaggag
gcagaacctaaacaagggagaattattgtcttccactgtcaagatggaaaggtgacacag
atagctgaggaggagataacaggggctgcctatacattgtgtgagtttaatgggaaatta
ctggccagtgttaacagtactgtacgactgtttgaatggcgtacagcggagaaagagtta
aagttagaatgctgtcattataataatatcatagccttgtatctgaagactaaaggagat
tttatactggttggagacttgatgagatctatcacattgttgttatataaatccatggag
ggtacttttgaagagattgctagagattgcaatccaaattggatgacagctgtagaaatc
cttgatgatgatatattcctgggagctgaaaatagctttaatttgttcacatgtcataaa
gacagtgctgcaacaactgatgaggaaagacaaaatttacaagaaacagggttgttccac
cttggtgaatttgtaaatgtgtttagacatggttcgttggtcatgcagcattcatttgag
agtagtacaccaacacagggttctgtcttgtttggtacagtcaatggtgcagtgggtcta
gttacacagttaccaccagatttctaccatttcttacaagatgtacaagggaggttggct
aaagttatcaaaagtgtcggcaaaatagaccattcattctggcgttcatttcacaccgag
cgtaagaccgaagtctgtacaggatttattgatggcgaccttattgaaagtttccttgat
ctctccagagaaaaaatggcagaagttgtacaaggtttacagattgatgatggtagtgga
atgaagagagatgcaaatgttgatgatcttgtcaaaatggtggaggaattaacgaggata
cattag
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integrated database retrieval system
