Ruditapes philippinarum (Manila clam): 132737158
Help
Entry
132737158 CDS
T09557
Name
(RefSeq) uncharacterized protein LOC132737158
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132737158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132737158
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132737158
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132737158
Messenger RNA biogenesis [BR:
rphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
132737158
DNA repair and recombination proteins [BR:
rphi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
132737158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
132737158
NCBI-ProteinID:
XP_060580393
LinkDB
All DBs
Position
Unknown
AA seq
410 aa
AA seq
DB search
MDIDEHFKSLKAIYPFNFDLKDEQKRVIQAVMDKKDASVLLPTGYGKSMCYVVPPLLFDQ
RDPSIQHTAMVVSPLVSLMQDQQQHLSNIGISSTILSPSDVGAMLDVEKKPVSIVFCTPE
ALQTSAVRKLLMSKTFNKRLSLLACDEAHCISEWGESFRPEYRQIAIVRSLVDAPLLALT
ATAIEQVQKDICQYLMIDDTAVCVAKLPDRYFCRSYSAVYDIWSWLTDNLDSDYECRIVE
MYHSSTDERKKEEILNEFKKSDSQIRILVCTVAFGMGVGINDVEIIIHWGAPKNTLMYWQ
EVGRAGRDGRPSLAIMYPFPRSLMKTITSEKMKSVVRSESCVRQSVLDTLRTAAMTESLT
TRVVCPDLTCEICICLSCSCCSNCKKLCSCIGNSDIVKDFLKRKLKIHLC
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggatattgatgagcatttcaagtctttaaaagcaatatatccttttaattttgattta
aaagatgaacaaaagcgcgttattcaagccgttatggataaaaaggatgcatcagttctg
ctgcctactggatatggaaaaagcatgtgttatgttgttccgcctcttctttttgatcag
agagatccttcgattcaacacactgcaatggtcgtttcaccacttgtcagccttatgcaa
gaccaacaacagcatctttctaatattggaatttcgtcgacgattttgtcgccttcagac
gtaggggcaatgctagacgtcgagaagaaacccgtatcgatcgtattctgcacaccagaa
gcactacagacatccgcagttcgaaaacttctcatgtcgaagacgtttaacaaacgactt
tctttgcttgcttgtgacgaggcacactgtatctctgaatggggcgaaagctttaggcca
gaatatcgacagatagcaatagtaaggagcctggtggacgctcctcttctagccctaacg
gcaactgctatagagcaggttcagaaggatatctgccagtacttgatgatagacgacact
gctgtctgcgttgctaaactgccagatagatatttttgtagatcatactcagctgtatac
gacatttggtcatggctcaccgataatctcgacagtgattatgaatgtaggattgtagaa
atgtaccattcaagtacagatgaaagaaaaaaggaagagattctgaatgaatttaagaag
agtgacagtcagatcagaatacttgtatgtactgtcgcctttggcatgggtgtaggcatc
aatgatgtcgagattatcatacattggggagcaccaaaaaatacgctgatgtactggcag
gaagttggtcgggctgggcgtgatggaagaccgtcattggcaatcatgtatccattccct
agatctttaatgaagactataacttccgaaaaaatgaaaagtgttgtcagatctgaaagt
tgtgtgcgacaaagtgtgttagacacgttgagaacggcagcaatgacagaatctcttact
acaagagttgtttgtcctgatttaacatgtgaaatttgcatatgcttatcatgctcgtgc
tgctctaattgtaaaaaactctgtagttgtattggtaactcagatattgtcaaagacttt
ttgaaaagaaaattaaagatacatctttgctga
DBGET
integrated database retrieval system
