Ruditapes philippinarum (Manila clam): 132737909
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Entry
132737909 CDS
T09557
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132737909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132737909
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132737909
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132737909
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132737909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCHC
zf-CCCH_2
Torus
zf-CCCH_3
zf-CCHC_3
zf-CCCH_RBM22
zf-CCCH_4
zf-C3H1
zf-CCCH_12
tRNA-synt_2b
Motif
Other DBs
NCBI-GeneID:
132737909
NCBI-ProteinID:
XP_060581264
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
MSLHQFLILHLILRLPSIINLDQCLYPSLEWTVSFSISVYYSDNINSDKTKSGAAICTFF
LTSVGCSKATACPFRHIKGEKTVVCKHWLRGLCKKGDDCEFLHEFDMTKMPECFFFSKYG
QCNNKECPFLHIDPEQKVKDCPWYDRGFCRHGPNCKNRHVRRLICQNYLCGFCLDGPKCK
FMHPSYDLPVQDEKTKKFHQTVTCHNCGESGHKSYQCPKITANSVPSVVSTSATTIEIKP
GATRIGAGIPGSGYHYGRGAYSHRGQPRLGFTFKPDNEPNQNLDFVTCFKCGLKGHYANR
CPKEIWRF
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcaccagtttctcatattacatttgatattgagattgccctcaataatcaac
ttggatcaatgcctttacccttccctggaatggacagtaagcttttcaattagtgtatat
tattcggataacattaattcggacaagacaaaatctggagctgccatatgtacatttttc
ttgacctcagtaggatgtagtaaggcaacagcttgtccatttagacacataaaaggggag
aaaactgtggtctgtaaacattggttgaggggtctctgtaagaagggagatgattgtgag
ttcttgcacgagtttgacatgacaaagatgcctgaatgcttctttttcagtaaatatgga
caatgtaataataaagaatgtccatttctacacattgatcctgaacagaaagttaaagac
tgtccctggtatgacagaggattctgtagacatggaccaaattgcaagaaccgtcatgtg
cgaaggctgatatgtcaaaactacctatgtggattctgtttagatggaccaaaatgtaaa
ttcatgcatccaagttatgatttgccagtacaagatgaaaaaacaaagaaattccaccag
acagttacatgccacaattgtggggagagtggtcataagtcctaccagtgtccaaaaatt
actgccaactctgtacccagtgttgtttcaactagtgcaactacaatagaaataaagcca
ggtgctactcgtattggtgcaggtataccaggaagtggatatcactatggcagaggggct
tattctcacaggggacaacctagacttggattcacatttaaaccagataatgaaccaaac
cagaatcttgactttgtcacatgtttcaaatgtggattaaagggccattatgcaaataga
tgtccaaaggagatttggcgtttttaa
DBGET
integrated database retrieval system
