Ruditapes philippinarum (Manila clam): 132737937
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Entry
132737937 CDS
T09557
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132737937
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
132737937
3'-5' decay
Other 3'-5' decay factors
132737937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
PhoH
ResIII
TPR_19
AAA_19
MOV-10_Ig-like
UvrD-helicase
AAA_16
TPR_1
PAM2
AAA_22
Bac_DnaA
TPR_2
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
132737937
NCBI-ProteinID:
XP_060581299
LinkDB
All DBs
Position
Unknown
AA seq
1605 aa
AA seq
DB search
MMDNDAEEEAPPQLPGQNSWHQGHGASQRARANEIKVNTIIAEVSELIKQKKFQEALENC
DKALSQFGNNERLLEKKIKVLCHQGHFEDAYSEALVWLQREPRHPVAIKELKRLKIVLDA
LKDQVYYFVLSCLKYTASGRCPYADKCIEAHSAEELEEWRDRFKFKRQQLQMAKDKHLHG
NTYPEQLMEKLMTAEYPKSVMVASVDYAKVIVNSDLKVNMISKKCTHAWTFTITSKICIL
RVVLLDEAVSNYFYISSISVGPKKTQKYQNLENHCQEWKNPEITINRPGEYVYRVKVVFK
TDIYGTFRETLVFDFGSEPVLSRDMHVESAPVTDTEKVLSEIRLSQQGRWISDQVQIVEY
KQKAPDDQKSIDLLKKYSLPGMNKFKFSEHLMQTPTKENYRLWMHQMLYVEELSQIDKIS
KFNITTSLQLVNRFLLMPGSLSAAKFAQDGELFARMKLEDDLSVDSVAGRLILKSTNLVW
LAPHKPGSKNNALPKKVYEAVIEDRGKNFIFLRLSRECVEELELTCDQEFSVEVQFQLNR
LHFCEMHHAVDALSTLDIVFPPALEQLPPVDWTWKEDVGDRTNEDQRDAIMKCAAYSHKA
LPPLLIVGPFGTGKTYTLAQCAKHVLLEENTRILICTHSNSAADIYIKEFLHPYVMDGNL
EARPLRVYYRHRWIQTVSETVLQYCIQEQSGPQAGTFRAPQIEDVEKHRVVITTLSTARL
LSDLDLPEGFFTHIFLDEAAQALECDMLIPLSLAGQNTRVVLAGDHMQMSPEAFSDFARQ
QQFHKSLLERLYDMYADNSPSKVMLCENYRANRAIIEFTSELFYDNKLKASKDPIAHSVY
YPLTFFTARGEEVQHENSSGYYNIAEIYEIIEQVDHLQKHWPQEWGEFDENSICVVAPYS
DQVYLMSTYKKQATPHYKVLMERAFVNVQGKQFRVIVMSTVRTRHTCPTDAAAADKLDLG
FLSNIKLLNTAITRAQSLVIAVGDPVSLCLAGRCSKVWEYYIEVCNDNNSFFGMTEPHLR
SLLNNAEMTKTYILNPLAPEFIPKAAYPGQQGQPVFISHTGQMGPAVGWPANHPAAYRGP
HPQVYPYGNPYVPMMYPSPYGPYHPYMGPLVYRQHPGMYPGMGGKGQMRGPLPKQSGPKV
KLPAQPALPVQRDDEDRSDSPRATATPPKPASSKQQAQASVSQPPKKSVQKRMVAVNMMP
RMPMYQPYYAYPQYVIPSEDPRYMQMPLQAPYYYSYPNMPRHPYPYMVPQPVHVQVQPRP
GSGSVSPASSDGAVKGNQPSSPTDSSQSDALSMSPGSTAGQHIQLLPNVKHVPTHLLYSA
SGSGNNSRSSTPVLANSPAPQQQGGMARDSPRNSQGEMEFPTFRRRHHSGPRPVSQSPSY
SSQGSHESSTSPVLNGDQTAAVYSSEASQKGAYSEVKVKSQSKSISKTTERQTLAAKAPR
ALKLNTNTTGFSRQFSDELGTPTEITNIVRMIEENIDEDDEEDAERTADILFRKEAAMHQ
NKPSPPAGKLFLNLPVQKSANEPIQSSSSSSHEDDVMPSYARAVRQQLPSYRETDFDPSM
LEPQTPMTPAGFHTPGTDMNTDPLELLRNLNINNDNLNKSAHGHF
NT seq
4818 nt
NT seq
+upstream
nt +downstream
nt
atgatggataacgatgcagaggaggaggctccacctcaacttccgggtcaaaattcatgg
catcaagggcatggtgcgagccaaagagcacgcgccaatgagattaaagtcaacaccata
atagctgaagtctcagaactgattaaacaaaaaaagtttcaagaagcattagaaaattgt
gacaaagctctttcccagtttggtaataatgaaaggcttcttgagaaaaagatcaaagta
ttgtgtcatcagggtcactttgaagatgcttacagtgaggcccttgtctggttacaaaga
gaaccaaggcatccagtagcaattaaagaattgaagagattgaagattgttcttgatgcc
ttgaaagaccaggtttattattttgttctaagttgtttgaaatatacagctagtgggcgt
tgtccctatgcagacaaatgtattgaggcccactctgcagaagagctagaggaatggaga
gacaggttcaaatttaaacggcagcagttacagatggcaaaagataaacatcttcatggc
aacacttatccagaacagctcatggaaaaactcatgactgcagagtaccccaagtctgtg
atggttgccagtgtagactatgcgaaggtgatagtaaactctgatctcaaggtaaacatg
atctccaagaagtgtacacatgcatggacattcaccatcactagtaaaatatgtatttta
cgagtggtattactagatgaggcagtttctaactatttctacatatccagtatatctgtt
gggccaaagaaaactcagaaatatcaaaatctagaaaatcattgccaagaatggaaaaac
ccagaaatcactataaatagaccaggggaatatgtgtacagggtaaaggtggtgtttaag
acagatatatatgggacatttcgagaaactttggtgtttgactttggttctgagccagtg
ttaagtcgagacatgcatgtagagtcggcacctgtaactgatacagagaaagttctctca
gagatacgactcagtcaacaaggacgctggatatctgatcaagtacagattgtagaatat
aaacagaaagctcctgatgaccagaaatctatagatttattaaagaagtattctctacct
gggatgaacaagtttaagttctcagaacaccttatgcaaacacccaccaaggagaactat
cggctctggatgcatcaaatgctttatgttgaagaactttcacagatagacaaaatatca
aagtttaacatcacaacatcgttacagctagtgaatcgtttcctgttgatgccaggctca
ttgtcagcagcaaagtttgcccaggatggagagctgtttgcacgtatgaagctagaagat
gacctctcggttgattcagttgctggacgactgatattaaaaagtacaaaccttgtgtgg
ctggctccacataaacctggttccaaaaacaatgcactgccgaaaaaggtatatgaagct
gtaatagaagacagggggaaaaatttcatatttctacgactgtcaagggaatgtgttgaa
gaacttgaactgacatgtgaccaagaattttctgtggaggtgcagttccagttaaacaga
cttcatttctgtgagatgcaccatgcagttgatgccttgtcaacactggatattgtcttc
cctcctgcactcgaacagttacctcctgtagactggacttggaaggaagatgttggagac
agaacaaatgaggatcaaagagatgctatcatgaagtgtgcagcatattcccataaagca
ttacctcccttactcattgttggtccatttggtactggaaaaacttacaccttagcacag
tgtgcaaaacatgttctgctggaagaaaacacaagaatattgatatgtacccattctaat
agtgctgctgatatttatattaaagagtttttacatccttatgtaatggatggtaatctt
gaagcacggcctctgcgtgtatattaccgtcaccgttggatacagactgtctcagagact
gttctacaatattgtatacaagaacagtcaggtcctcaggctggaactttcagggccccg
cagatagaagatgtagaaaagcatagagtagttatcaccacattgagtacagcaaggtta
ctctctgaccttgatctcccagaaggattttttacacatatatttctggatgaagctgca
caagccttagagtgtgatatgttgattccactgtctttagcaggtcaaaatactagagta
gtgttagccggcgaccatatgcagatgagtccagaggcattttctgattttgccagacag
caacagtttcacaagtcattgttggagcgtttgtatgatatgtatgctgacaatagtcct
agtaaagtgatgctgtgtgagaattaccgtgctaacagggccatcatagagtttacatcc
gagttattctacgataataaactgaaggcatcaaaagatcctatagctcacagcgtatac
taccctctcacattctttacagctcgaggagaggaagtacaacatgaaaatagttcagga
tattacaatattgctgagatatatgagataatagagcaagttgaccatctacagaaacac
tggccacaagaatggggtgaatttgatgagaacagtatatgtgtagtagctccttactct
gaccaggtatatcttatgtccacatacaagaaacaagcaactccccactacaaagtactc
atggagagagccttcgttaatgttcaaggaaagcagtttcgtgttatagtaatgagtaca
gtaagaacaaggcatacatgccctactgatgcagcagctgctgacaagttagatctaggc
ttcctttccaacattaaactattgaatacagcaatcactcgtgcacagtctttagttata
gcagtaggtgatccagtatccttatgtctagctggcaggtgcagtaaagtgtgggaatat
tacattgaagtttgcaatgataacaacagtttttttggaatgactgaaccacatctgagg
tccctgctcaataatgctgagatgacaaaaacatacatcctgaacccacttgctccagag
tttatccccaaggctgcatacccaggtcaacagggacagcctgtatttatctctcacaca
ggacagatgggcccagcagttggttggcctgccaatcatcctgcagcatatagaggtcct
catccacaggtgtatccctatggaaatccttatgtacctatgatgtatccatcaccatat
gggccatatcacccatacatgggacctcttgtatacaggcaacatccaggaatgtaccct
ggaatgggaggaaaaggtcaaatgaggggaccattacctaaacaatcaggcccaaaggtg
aaattaccagcacagccagctcttcctgtacaacgtgatgatgaagatcgtagtgattca
ccaagggcaactgccacacctccaaagcctgcatcatctaaacagcaagctcaagcatca
gtctcgcagccacctaagaaatctgtccagaaaagaatggttgcagtcaatatgatgccc
agaatgccaatgtatcagccttattatgcttatccccagtatgtgattccatcagaagac
ccaagatacatgcagatgccacttcaggctccctattactactcgtatccgaacatgcca
cggcatccttacccttacatggtgcctcaaccagttcatgttcaagttcagccaagaccc
ggctcagggagtgtgtctcctgccagttcagatggtgccgtaaaagggaatcagccatca
tcaccaacggacagcagtcagtcagacgccttatcaatgtctccaggttcaactgctggt
caacatattcagttattaccaaatgtaaaacatgttcctacgcacttactctatagtgca
tcaggaagtggcaataactcccgttcaagcactcctgttttagcaaattcacctgcacct
cagcagcaaggaggcatggcaagagatagtccaaggaattcacaaggagagatggaattc
ccaacatttagaagaaggcatcatagtgggccaagacctgtctctcaaagccccagctac
agttcacaaggatctcatgaaagctctacatctcctgttcttaatggggaccagactgca
gctgtttattcttctgaagcaagtcagaaaggagcatattcagaggttaaagttaaatca
cagagcaaatctatttcaaaaacaacagagagacaaacattagctgctaaagcaccacga
gcattgaagctgaacactaatactacaggctttagtcgtcagttcagtgatgaacttgga
actccaactgaaattacaaatattgtaagaatgatagaagaaaatattgatgaagatgat
gaggaggatgcagaaaggactgcagatattttgttcagaaaagaggctgccatgcatcaa
aataaaccctcaccaccagcaggcaagcttttcctcaatctgcctgtacagaaatcagca
aatgagccaatacagtcttcatcaagtagttcacatgaagatgatgttatgccatcatat
gcaagagctgtaaggcaacagctcccatcttatagagagactgattttgacccatcaatg
ttagagccacaaacacccatgacacctgctggatttcacacccctggtacagatatgaac
acagaccctcttgaactcttgcgtaatctgaacattaataatgataacttaaacaaaagt
gctcatggtcacttttaa
DBGET
integrated database retrieval system
