Ruditapes philippinarum (Manila clam): 132738616
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Entry
132738616 CDS
T09557
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 19-like isoform X1
KO
K11847
ubiquitin carboxyl-terminal hydrolase 19 [EC:
3.4.19.12
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rphi01002
]
132738616
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132738616
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132738616
Peptidases and inhibitors [BR:
rphi01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
132738616
Ubiquitin system [BR:
rphi04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
132738616
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
CS
UCH_1
zf-MYND
USP7_C2
MYND_ZMYND11_ZMYD8
ubiquitin
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
132738616
NCBI-ProteinID:
XP_060582153
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MPSLPGSITENPVDMDSKKDDPAQQSKRKKELNNSRENQQAPKYDWSQTEDSVTMVLKIE
NITNELLRDSDVTFADSDVTVKLPDGRKWTWQLYGEIFREDSRVKVKKRKMSLHMKKKKS
VTWSNLESLDVCLTLKQPTVEEPLPSPTESLEPASSPSVMSQYSDSQLPASSIAGTNLSE
EPNVTTDDTRSDDVETENSDCPKKEEEPVVELQLIKHDFIEKDDVFIVHIYVKGVNKDNL
SVMFDKRNFSVKFQSNHPQFLKLHSGATEDTKFCWQIKLRGEIIPENSKFKVNQSCIEIT
LAKSVFGRWGDLEALKRKETPPSSKSDNWMSVNSVSVKTDSSTDKERETMYSEMKQNIER
DNLKDKPPDGGLTASPVQKPTCKVQPLNKQVEEREQVVRPPGFTGLDNLGNTCFMNGVLQ
CLVNTREFRDFFLEGKFQNDLNTDNVLGSGGKLAVCFAVLCKVLWSGKHFSYAPSKLKNL
VAQKASQFTGFAQHDSQEFLAFLLDGLHEDLNRIKKKPYTETVEDGGRPDEVVANEAWDI
HKKRNDSFIVDLFQGQYKSKLVCPACGKVSITFDPFLYLSLPLPKRQRLLPVTFMWKDPY
RKPIRYMLKLSKEATVEGLKDALHRKTGVAPSNIRVFEAYKGRIHKMFVRGSSLSLVQAN
DCIIGCEVLSEDVAGEPVYEVAIVQRTLMPNQFPSKCSSCKKLCPEGSKLKRCTKCFKVG
YCDQTCQKNHWMYHKGQCKTTPEPVGTPFILSVPESRATFSKVCQLMEAYSRYSVDVFQP
PVKQDTTPKLSSRLSSSNLSNSSQSSGSQNSLDSQSSFSSSCTITAEQEQNLEDTDLSPD
CDRLSIENVQSFTIGSDSALSGQTGLSVVSDTNQNCQTGVMEINKPVIGKAEKDSVNVTQ
KSDSGFSSMVDVHTQGGTNGSEGSRCATASGSDKGQEKEFTSPIKPVLGIQTGDTERSTP
MFYIKPVNSDGVGLTGTDGERLDDKGEVPLNLTNKFFLSVDWKNNDKLPGYVLVQSKEMD
FENDSSMMSASLEESHVTLEQCLELFTEPEILNPEEAWYCPQCKEHREATKQLSTWKLPH
TLIIQLKRFSFRNFIWRDKIDKMVEFPTRGLDLSAFYVGSRPSNEPPPIYDLYGVVNHHG
GILGGHYTAHVRCADLSPGVTSEVGWRLCDDSRVSTVSHEKNVVTRAAYLLFYRRREVFV
PPPPVVSGESVEDDDEYQSASSEIEEVSELPGNIQEEGHARLVIDTSRDTEDSTCKDDIE
LVEADFREEKTVTEGEQVTVIASDEEDLGYTDMDSVD
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctgccaggatccatcacagaaaatcctgtagacatggattctaaaaaggac
gatccagctcaacaatctaaaagaaagaaagaattgaacaacagtagggagaatcaacaa
gctcccaaatatgattggtctcagacagaagatagtgttactatggtattgaagatagaa
aacataacaaatgagcttttaagagacagtgatgttacatttgcagatagtgatgtgaca
gttaaacttccagatggtagaaaatggacatggcagttgtatggtgaaatatttcgtgag
gacagccgtgttaaagttaaaaaacgaaaaatgagtctacatatgaagaaaaagaagtca
gtcacatggtcaaatcttgaaagtctagatgtatgtttaacattgaaacaacccacagta
gaagaacctctgccatctccaacagagagcctagaaccagcttcatcaccaagtgtgatg
tcacaatattctgattcccagcttcctgcttcaagcattgctggtaccaatctttcagag
gaaccaaatgtaacaacagatgacacaagaagtgatgatgtagaaacagaaaacagcgat
tgtccgaaaaaagaagaagagccagtggttgagctacagttaataaaacatgatttcata
gaaaaggatgatgtctttattgttcatatatatgtgaaaggtgtgaacaaggataacctt
agtgtgatgttcgacaagcgaaattttagcgtcaagttccagtcaaaccatccacagttt
ttgaaacttcactcaggagccacagaagataccaaattttgctggcaaataaaacttaga
ggggagataattcctgagaacagcaaatttaaagtcaaccaatcttgtattgagattacc
ttggcaaaatctgtatttggcagatggggtgatctggaagctttgaaaagaaaagagaca
cccccatcatcaaagtcagacaactggatgtctgtgaattctgtgtctgtaaagacggac
agtagcacagacaaggaacgtgaaacaatgtacagtgaaatgaagcagaatattgagaga
gacaacctgaaagacaagccacctgatggcggcctaactgcctcacctgttcagaaacca
acatgtaaagtgcagccattgaataaacaggtagaagaaagagagcaggttgtacggccc
ccaggattcactggacttgacaatcttggcaacacatgttttatgaatggtgttttacaa
tgtttggtgaacacaagggagtttagagacttttttctagaaggaaagttccagaatgat
ttaaatacagacaatgttcttggtagtggtggaaaattggcagtttgttttgctgtgtta
tgtaaagtgctttggtctgggaagcatttttcttatgcaccctccaaattgaagaatctg
gtagcacaaaaggcaagtcagtttactgggtttgctcagcatgactcccaggaattcctg
gcattccttcttgatggacttcatgaggatttgaaccgtataaagaagaaaccatataca
gagacagtagaggatggtgggagaccagatgaagttgttgctaatgaagcatgggatatt
cataaaaaaagaaatgattcgtttattgtagatcttttccagggtcagtacaagtccaaa
ttggtatgcccagcatgtggaaaggtgtcaataacatttgatccattcctgtacctgtca
ctgccattaccaaagaggcagcgcttgctacctgtcactttcatgtggaaagatccctac
aggaaacctattaggtatatgttgaagttatcaaaagaagctacggtagaaggtttaaaa
gatgctttacatcgtaaaacaggagttgctccaagcaatatacgagtatttgaagcatat
aaaggaagaattcacaagatgtttgtgaggggctcaagccttagtcttgtacaagcgaat
gattgtataatagggtgtgaggtattgtcagaagatgtcgcaggcgagcctgtgtatgag
gttgccattgtacagagaacactgatgccgaatcagttccctagcaaatgtagcagctgc
aagaaattatgtccggaaggctcgaagctgaaaagatgtacaaaatgtttcaaagttgga
tactgtgaccagacatgtcaaaagaaccactggatgtaccataaaggtcagtgtaagaca
acacctgaacctgttggtactccatttattctgagtgtacccgaatctcgtgccacattc
tctaaggtgtgccaactcatggaagcttattccagatactcagttgacgtcttccaacct
ccagtgaagcaagatacaactccaaaactcagtagccgcttgtcctcttccaatctcagt
aacagcagtcaatcaagtggtagtcaaaatagtcttgatagccaatcgtctttcagtagc
tcgtgcactataacagccgagcaggaacaaaatctcgaagatacagacttgtctccagac
tgtgatagactgtccattgaaaatgttcagtcatttaccattggcagtgactcagcactt
tccggtcagaccggtttaagtgtggtgtctgataccaatcaaaactgccagactggtgtt
atggaaattaataaaccagtcataggaaaggcagaaaaggatagtgtaaatgtaacacaa
aagagtgattctgggtttagctcaatggtagatgtacacacccagggagggaccaatggt
tctgaagggagtagatgtgcaacagcttcagggagtgataagggtcaggaaaaagagttt
acctcgcctattaagccagttttggggatccagacaggagacactgagagatctactcca
atgttttatataaaaccagtcaactcagatggtgttggtcttacagggactgatggggaa
aggcttgatgacaaaggggaagtccctctcaatttgacaaataagttcttcttgtcagta
gattggaaaaataatgacaaattacctggatatgtactggttcagtcaaaggagatggac
tttgagaatgacagtagtatgatgtcagcttcattagaagagagtcatgtgacgttagaa
cagtgtctagagttgttcacagagccagaaatattgaatccagaagaagcatggtattgt
ccccagtgtaaggagcatagggaggcaacaaaacagttatcaacgtggaaattaccacac
actctgattatacagctgaagagattttctttccgcaactttatatggcgagataagata
gataaaatggtagagtttcccacaagaggtttggacttgtcagcgttctatgtgggaagt
cgaccgagtaatgaacctccaccgatatatgacctttatggggtcgtcaatcatcatggg
ggtattttaggcggacattatacagcacatgtcagatgtgcagatctatcacctggtgta
actagtgaagtcggctggagactttgcgatgacagtcgggtttcaacagtgagtcatgaa
aaaaatgttgtgactcgtgcggcgtatctgttattttatcgtcggcgagaggtctttgtt
cctccacctccggttgtttccggtgagtctgtggaggatgacgatgaataccagtctgcg
agttccgaaattgaggaggtgtcagagttgcccggaaacatacaagaggaaggtcatgca
aggttggtaattgacacatctagggataccgaagattctacttgtaaagatgatattgag
cttgtggaagcagatttcagagaagaaaagactgtgactgaaggtgaacaagtgactgtt
atagcatctgatgaggaagatttaggttatacagacatggactcagttgattaa
DBGET
integrated database retrieval system
