Ruditapes philippinarum (Manila clam): 132738824
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Entry
132738824 CDS
T09557
Name
(RefSeq) cartilage intermediate layer protein 1-like
KO
K24436
cartilage intermediate layer protein
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rphi04990
]
132738824
Domain-containing proteins not elsewhere classified [BR:
rphi04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
132738824
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Ig_3
TSP_1
CILP
TSP1_spondin
Ig_2
CILP_C
I-set
VWA_2
TSP1_CFP_C
ig
TSP1_ADAMTS
V-set
Ig_5
Ig_4
DUF3914
Motif
Other DBs
NCBI-GeneID:
132738824
NCBI-ProteinID:
XP_060582412
LinkDB
All DBs
Position
Unknown
AA seq
1259 aa
AA seq
DB search
MDVKTSLACLLSLTLFGLVYSQNDQPQMDVVLLMDSSDSHRSQNFDNEKKFALEFVRQIF
NKYTQISLYTFGSSAYSQFTLDAYNDIQLMKQAITYMWYSTGDGDVPTAVEYTIKNGFSK
SAGGRECVPKALVILTHSPIGEQEALRISILLKTERIRCFILNMAGNSANANFIKITDAS
TRTIPITDFNALESSATTITSLVKADLPSTGCGRFSDWGNWTTCSVTCDIGLEFRSRHCI
KLEDTDKDCDGQLTEESVCIMPNCTEPVNGAWSDWVHWGPCTKTCQNGTQRRTRQCDRPH
PRNGGKSCPGVRIQTRPCAEWKCPDCNKACPAGAHISKSCDACECSSVTLYGQIMDTTKH
AVEGAEIFLESSKYKPIAKTDRFGIFSKTGICILNENIYIQAPTCESKHFAPKELNATHW
TLINATLEKYIPPVITVQPHDKVRMVGQSLSLCCAADGKPVPSAFKWFKNGIELENLGTN
GTLKLSSVQKSNSGSYHCYTETEAGVTLSEDVQVEVYDFKEDTCGAPHSKLQELPHGCYL
TSDTSRNNTINVGDCGKALCIKSSLHDNGSCSDYWPHHCCNAKDVDVVDITCDGFSYKTT
KIKSCECKPCVFKTTVTGRAFGRQNGTEIPFRIGQILINGNIATTTNAAGFFKFDVPKGI
KRVVATFHDKVFKKFMDTTKIIQVKEGGETFSTIVIPLRPQPISFHTENGTEIHLGTGPS
GMPPAGQLSIPTNAIVTPDGQPFNGTAKTILHFMDPRNRDDIESANGDFESESPGGDKVP
LKTYGMFQLGIEDDKGKELKVNKPLKFTLDASQFNIEHDENGDPDLSLWDYDNNKGVWVE
TAKMKYKQQSNTRRQLLEAVSIEAFFHPPRIPDLKFNDVQYERVWTGRYTNCDHSVKIYE
NVVRRTPKAGICYASISVYTDMNLKEAYTGGDIEIKAYVKELDNSSYIGANKATYLRKGH
TCLQVFCDKLVYIHVVRNGKERFYAANHHLPYPGYIRDTNDNEILFESRDLGRSIDCSMY
PPGTVCEGPMYQKVSGGRCNRVGINDQTFQFKFAPFTKAPEHNYVAGEGVYDKKLSWYPV
SPAKSTFRSCFMKVRVDIVDTFDIRFFAKSHLKDVNGDEFGSYSTGPTPDPRKTDLTVRG
ACIEFRCPGYIKDGNKEIFDLDTAIEVRMVTSNGNLRCKISKTNSLINITHITDATKGDI
GFTFNAKAGINYGSRYGIFISDSPPKQVEQFCESGFDRGPNVKGLMDPTQSTAVEFDCT
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaaaacatcgcttgcatgtttactttctttgacactttttggattggtatat
tcgcagaatgaccaaccacaaatggatgttgttttgctcatggattcatctgatagccat
cggtctcaaaactttgacaatgagaagaagtttgctttagaattcgttaggcagattttt
aacaaatacacacagatcagtctttacacattcggctccagtgcttacagtcaattcaca
ttagacgcctataatgacattcaactcatgaagcaagcaataacgtacatgtggtacagc
acaggggatggggatgttcctactgctgtcgaatacacaatcaagaatggcttttcaaag
tctgctggcggccgggaatgcgtcccaaaagcattagttattctgactcactcgcctatc
ggcgaacaagaagccttaagaattagcattttgctaaaaacagaacgaatacgatgtttt
attcttaacatggctggaaactcagcgaatgcaaattttatcaaaataacggatgcctct
acaagaacaataccaattactgatttcaacgcattggagtcatctgcgaccacaataacg
agtcttgttaaagcagatctcccgagtactgggtgtggaaggttttccgattggggaaat
tggacaacatgcagtgttacatgcgatattggcctggaattccgttcaagacactgcata
aaattggaagatacagataaagactgtgatggacaacttacggaagagtcagtttgtatc
atgccaaactgtacagaacctgtcaatggcgcatggtctgattgggtacattggggaccc
tgtacaaaaacttgtcagaatggaacgcaaaggcgaacaagacaatgtgaccggccacat
ccaaggaatgggggaaagagctgccctggagtacgaattcagacaagaccctgtgcagaa
tggaaatgtccagattgcaacaaggcttgcccagccggtgcgcatatttctaaatcatgt
gatgcatgtgaatgctcaagtgtaacgctatatggacaaataatggatactacgaaacat
gccgtcgaaggggcagagatatttctagagtcgagcaagtataaaccaatcgcaaaaaca
gacaggtttggaattttcagcaagacaggcatatgcattttaaacgaaaatatttacata
caagctccaacatgtgaaagtaaacattttgcaccaaaggaactgaatgctacgcattgg
acactgataaatgcgacgcttgagaaatacatacctccagttatcacggttcagccgcat
gataaagttcggatggttgggcagagtttaagtctttgctgtgcagctgatgggaagcct
gtcccatctgctttcaaatggttcaaaaatggaatagaactggaaaatttaggtacaaat
ggaaccctgaaattatcatctgttcaaaagtctaacagtggatcctatcattgctatacc
gagacagaagcaggagtgactttatcggaggatgttcaagttgaagtatatgattttaag
gaagatacgtgtggagccccacattcaaagttacaggagcttccacatggatgttaccta
acaagtgacacaagcagaaacaacacaatcaacgttggagactgtggcaaagcattatgt
ataaaatcgtctttgcatgataatggatcttgcagtgattactggccacatcactgttgc
aacgctaaagacgtagatgtcgttgacatcacatgtgatggatttagctacaaaactacg
aaaataaaatcgtgtgagtgcaaaccatgcgtttttaaaaccactgttacgggacgagct
tttggtaggcagaatggtacagaaattccttttagaattgggcaaattcttatcaatgga
aacattgcaaccaccacaaatgctgcaggattttttaaattcgatgtacctaaaggaata
aagcgtgttgtagctacttttcatgacaaagtatttaaaaaattcatggacaccacaaaa
ataatccaggttaaagaaggaggggaaacattttccacaatagtcattccactacgtcca
caacctatctcgttccacactgaaaacggcactgaaatacatctagggacaggtccatct
gggatgcccccagcaggacaactgtcgattcctacaaatgccatcgtcacgccagatgga
cagccttttaatggtactgctaaaacgatactgcattttatggatccgaggaatagggat
gatattgaatctgcaaatggagactttgaaagcgaatcgcctggaggggataaagttcct
ttaaagacttatggaatgttccagttgggtattgaagatgacaaaggaaaagaacttaaa
gtcaataaacctttgaaatttacacttgatgcaagtcaatttaacattgaacatgatgaa
aatggagatcctgatttatcattatgggattatgacaacaataaaggcgtttgggtagaa
acagccaagatgaaatataaacaacaatctaataccagaaggcagcttcttgaagctgta
agcattgaagctttcttccatccgccaaggattccagatctgaagttcaacgatgttcag
tatgaacgagtttggacaggacggtatactaattgcgaccacagtgtcaaaatatatgag
aatgtcgtacgaagaacaccaaaagcggggatatgttacgcaagcatatcagtttataca
gatatgaaccttaaagaagcatatacgggtggggacattgaaattaaagcatatgtcaaa
gagttagacaactcctcatatattggtgcaaataaagcgacatatttgagaaaggggcac
acttgccttcaagtgttttgcgataaattggtatatatacatgttgtaagaaatggtaaa
gaaagattttatgccgccaatcaccacctaccatacccgggatatataagagacacaaat
gacaatgaaatactttttgagtcaagagatttagggagatcgatagattgcagtatgtac
ccacctggtacagtgtgtgaaggtccgatgtatcaaaaggtcagtggaggaagatgtaac
agagtaggcataaatgatcagacgttccaatttaagtttgcaccattcacaaaagcccca
gagcataattatgttgccggtgaaggcgtatatgataagaaactttcttggtaccctgtt
tcacctgcgaaatcaacatttaggtcttgtttcatgaaagtacgagttgatatagttgat
acatttgatatacgattttttgcaaagagtcatttaaaagacgtaaacggcgatgaattt
ggatcatactctacagggccaacccctgatcctagaaaaacggatctgactgtaagggga
gcttgtatcgaatttcgatgcccgggatacatcaaagacggcaataaagaaatatttgac
ctggatacagcaatagaagttcgtatggtcacttcaaatggaaacttgcgatgtaaaatc
agtaaaacgaattcgttgataaacataacgcatatcacagatgcaacaaaaggagacatt
ggtttcacatttaatgcaaaggcagggataaattatggatccagatatggtattttcatt
agcgacagtcccccaaaacaagtggaacaattctgtgaaagtggattcgatcgtggtcca
aatgtcaagggcttaatggatccgacacaaagcacagctgtcgaatttgactgcacataa
DBGET
integrated database retrieval system
