Ruditapes philippinarum (Manila clam): 132738983
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Entry
132738983 CDS
T09557
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
rphi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132738983
09124 Replication and repair
03420 Nucleotide excision repair
132738983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132738983
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132738983
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132738983
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132738983
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
ALMT
Motif
Other DBs
NCBI-GeneID:
132738983
NCBI-ProteinID:
XP_060582605
LinkDB
All DBs
Position
Unknown
AA seq
555 aa
AA seq
DB search
MSRQSEEVLLIVNSVKNKKVDGVLYMMGERLAWMQPSKNSFSYSHAYADIKSQKISADTK
ERVQLQLVMHDGGANTFQFNNPAGRAAQMADRESVKELLQQLLPKFRRKLSSELEEKNRL
LQENPELFQLYKDLVVSQVITAEEFWSTQGPKYQSKEKIEQKQTTGVSAAFLADIKPETD
GCNGLKYNLTADIIESIFRTYPMVKKKHAEYVPHEMTESEFWTRFFQSHYFHRDRMALGT
KDLFSDCAKKDEEEIKIEVERKNTDPLLDLTSHKDGNLDEGYGGTGDDKRGTINPANLTM
IRRFNHHSTMVLKACEQAGSQVDSGNSSLTNGNHTNGTDSRVNGESSKEQNHEPPKKRAR
IREKLHFDDLEEKQSKNNVNLRLSRMERYLHGPTPVTSSRYASSEDLISATNSVSAEIDV
WYPDLSHVMHGTTAVSILGELSPGGALMQGTTQQQLNQMVPEDMQNELKQNYNALCELLR
HFWSCFPVSSKFLEEKVVKMKSTLERFNMSKLNPLKDKLQANHYSMDLTGHMQDLLNTAY
TKFETWQSKRSLKKS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggcagtcggaggaagttttgttgatagtgaacagtgtgaagaataagaaagtg
gatggcgtattgtatatgatgggagaaagattggcatggatgcagcccagtaaaaacagt
ttctcatacagtcatgcttatgcagatatcaaatcccaaaagatatcagcagacactaaa
gagagagtacagttacagcttgttatgcacgatggaggtgcgaacacattccagtttaac
aatccagctgggagagcagcacagatggctgaccgggaaagtgtaaaagagctccttcaa
cagttattaccaaagttcagacgaaaattgagtagtgagttagaggaaaagaatagactt
ctacaagaaaatcctgagctatttcagttgtataaagaccttgtagtgagtcaagttata
acagcagaggaattctggtcaactcagggccctaaatatcaaagtaaagaaaagattgaa
caaaaacaaacaactggtgtttctgcagcatttttggctgatattaaaccagagacagat
ggttgcaatggtttgaaatataaccttacagcagacatcatagaatctatttttagaaca
tatcccatggtaaagaagaaacatgcagagtatgtacctcatgagatgacagagagtgag
ttctggacgcgattcttccagtcacattatttccacagagaccgtatggctttaggtacc
aaagatctcttttctgactgtgccaagaaagacgaggaagagataaagatagaagttgaa
aggaaaaataccgaccctttattagatctcacatcccataaagatggcaatttagatgag
gggtatggtgggacgggtgatgacaaacgaggaacgataaatcctgctaacctcaccatg
atacgaaggttcaaccatcactctaccatggtattaaaagcttgtgagcaagctggtagc
caggtcgactcaggaaattctagtttaacaaatggtaatcacacaaatgggacagattca
agagtaaatggtgaaagtagtaaagaacaaaaccatgaacctcccaagaaaagggctaga
atacgtgagaaacttcactttgatgaccttgaagagaaacagagcaagaataatgtgaac
ctgcgtctgtcacggatggagcgttacctgcacgggccgacacctgtgacatcatcacga
tacgcctcaagtgaggatttaatctcagcaactaactctgtatcagcggagattgacgtg
tggtatccagatctcagtcatgtaatgcatgggactacagcggtcagtattttaggagag
ttgtcaccaggtggcgctttaatgcagggaactactcaacaacagttaaatcaaatggta
cctgaagatatgcaaaatgaattaaaacagaattacaatgcattatgtgaacttctacgg
catttctggtcatgttttcctgtctcatccaaatttttagaagaaaaggttgttaaaatg
aaatctacattagaaagatttaacatgtcaaagttaaatcctctcaaagataaactacaa
gccaaccattatagtatggatctgactggacatatgcaggaccttcttaacacagcctac
actaagtttgagacatggcaatctaaacgatcattgaagaaatcctga
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