Ruditapes philippinarum (Manila clam): 132739290
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Entry
132739290 CDS
T09557
Name
(RefSeq) general transcription factor IIF subunit 1-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132739290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132739290
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
132739290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
DUF3874
RecX_HTH1
SPK
Motif
Other DBs
NCBI-GeneID:
132739290
NCBI-ProteinID:
XP_060582949
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MTSKPQPVAGASAGATKPGASTSTQSTTQEFVVRVSNNTSKKYSMIKFSTGTEVDFLKLT
NTTVRMERENNLREYKTAHNLDMMPKFGAGSEYGREQKEEARRKKFGINIKKYNPDDQPW
LMKVGKGKDAKKYKGVREGTITQNTSYYIFTQSPDGAFDAFPIDEWYNFQPVVQYKYLNS
EEAEEEFLKRDKRMNMFSIMKRIKKDEDIVDPDGDEKKVKKKKDKSLILTDMEDWGLSDD
EDDDDDDDEDEDGEKKPKKKEKKPTKNKSRKVSKHNDNDEAVEESDEGDFDDRELDYISD
SGSESSMDEKDKDAKYDTQGVDQERGLKKLIGSDEESSDEEEENKDEEENDEGESDEGEG
EGSGVKKEKKVKKEKKDKNKDGKGGDDSDSSSSSSDSEDSDIEKNEDKFSVLFMQKKKGG
SRSNTPTFDKSADNKQDVKVEVKSDGVKRKMEGEDTTDSQKKSRTESPVVQSASSASLSS
GEITEEAIRRYLSRKPMTAKELVQKFKSKKPQMSKDQMTQRIGQLLKKINPEKKYVNNIL
YLSLKKTE
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaaagcctcagccggtggcaggggcaagtgcaggggccacaaaacctggagcc
tcaacaagcacacagtcaacaacacaggagtttgttgttagagtgtcaaacaatacatca
aagaaatacagtatgatcaagttttctactggaacagaggttgacttccttaaactaaca
aacacaactgtcagaatggaaagggagaataatctgagggaatacaaaactgctcataat
ctagatatgatgccaaaatttggtgctgggagcgagtatggaagggagcaaaaagaagag
gctagaaggaaaaagtttggcataaatataaagaaatacaaccctgatgatcaaccatgg
ctgatgaaagttggtaaaggcaaagatgctaagaaatataaaggtgtgcgtgaaggtaca
attactcaaaatacatcatattatatatttacacaaagtccggatggtgcatttgatgca
tttcctatagatgaatggtacaacttccagccagttgttcaatataaatatctcaactct
gaagaggccgaggaagaatttctgaagagagacaagagaatgaacatgttctctatcatg
aagaggataaagaaagatgaagacattgtcgatcctgatggtgacgagaaaaaagtcaag
aaaaagaaagacaaaagtcttatattgacagacatggaagactggggtttaagtgatgat
gaagatgatgacgatgatgatgatgaagatgaggatggagagaaaaagccaaagaagaaa
gaaaagaaaccaacgaagaataaaagcaggaaagtatccaaacataatgataatgatgaa
gctgtggaggaaagtgatgagggagattttgatgacagggaactggattatatctcagat
tctggcagtgaatcgtctatggacgagaaggataaagatgccaagtatgacactcaaggt
gtagatcaggagcgagggttgaagaaactgattggatcagatgaggagagtagtgacgag
gaggaggaaaataaagatgaggaggaaaatgatgaaggagagtcagatgagggcgaaggc
gagggaagtggagtcaagaaggagaaaaaggttaagaaagaaaagaaggataaaaataaa
gatggaaagggaggagatgacagtgacagtagtagctcttcctctgacagtgaagattct
gatatagaaaaaaatgaagacaaattttcagttctctttatgcagaagaagaaaggggga
tcaaggtcaaatacccctacatttgacaagtcagctgacaataagcaagatgtgaaggtg
gaagtcaaatcagacggtgtgaagaggaagatggagggtgaagacacaacagactcacag
aaaaaatctagaacagaatctccagttgtccagtcagcctctagtgcttctttatccagt
ggtgaaataacggaggaggcaattaggaggtatttgtctcgtaagcctatgaccgctaaa
gaactcgtacagaaattcaaatcaaagaaaccacagatgtcaaaagatcagatgacccag
cgtattggacagttactaaagaaaatcaatcctgaaaagaaatatgtgaacaatattctg
tatctatcattgaagaaaactgaatga
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