Ruditapes philippinarum (Manila clam): 132739316
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Entry
132739316 CDS
T09557
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132739316
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
132739316
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3535
Helicase_C
HEAT
HEAT_EF3_N
TOR1L1_N
HEAT_2
Vac14_Fab1_bd
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
132739316
NCBI-ProteinID:
XP_060582986
LinkDB
All DBs
Position
Unknown
AA seq
1761 aa
AA seq
DB search
MTTRLDRLFLLLDTGSTALIRKSAAEQLGDVQKLHPYELNNLLTKVLVYLRSSNWDTRIA
AAQAVNAIARNVPQWEPRGAPKQECGEDIPGAEGKLLFSKFDLQCVLQNGTSLLGSEGVQ
FNQDDKLTGIDERERLLIQRQMLNKRLGLDVAGNLQLDIDKDLYSDEDLLTGMNKETAFK
QELKHVGDLVNQQIGSSLSSRERNRAKRKARMMIKRPSRESPLPDSENEPPVKKMKSENG
SENTGIISDLTEEEDWPFDCFCELLMADLFHTAWETRHGAATGLREVIKLHGRGAGKSQD
TPADQMSAVNQIWLSDLALRLLSVIALDRFGDYVSDEVVAPVRETCAQTLGVVIKFLEAD
GIQGVLCILLQLLTQKQWEVRHGGLLGMKYLLAVRKDMTGDLLPKVLPFIYQGLQDADDD
NRAVAASALIPVADDLVQILPQQVPVIVLCLWETLLDLDDLTASTNSIMTLLSALVAHPK
ANVIDVTEKPLTELVPRLLPFFRHNIPSVRTATMKTLHTLLTMQSTKQSVDNWLPNLLQP
LLCHVYQRSLLETHPEILSVITEVWNCMLHRSPPEYLVVAATPWMGVWLSLAMQPSKIPY
DHNYLVEAKHPGRISFVMRKGNTAAQLLGCLCSKITQPIQGLPDNCEKPSESLDKLLVFH
LNTKSAIQRIVIAEVVHAWAATKSCECSTDIKSKLLETLTEGIYYDEIALGFTRLQTECR
DFIASLKQQGINMDQIIAPGTKLCFSIKTCFSMIYLTRVQSSLAKAVVSLDAIPEKLNPV
IRPLMDCIKKEENIYIQRDGGKCVSGLLRKCLSRDPCPNNKVIKNLCAFLCCDPSVTPVC
TQTNNNSTSEASCDMYKENLTLAKLNKIPDTDKKRLQRSSSVKNDVTVSPDLLKDEEQVY
FNYLHLSHTCATFATPLKWYCVAMHIFWRDAIQSKQLLSIQRRGGEITLNILTSDFNDKL
PQELPSLWETATKYLLENQDSVADMTDLVAQETVNCLQVVESIVPSIHSSLLTKFVDSLP
CLQCYLQNKYSGVRHMSARCVGMLSRLSTADVMLFLIEKVLPMFEASDNDVQRQGASEAI
ANVIEKLNMDIIPYIVLLIVPVLGRMTDQHEHVRTVATHCFASLIRLLPLESGVTNPPDM
KSSLVERKVKERAFLEQLLDGTKIENYKVDVPIKAELRKYQQDGVNWLGFLNKYKLHGIL
CDDMGLGKTLQSICIIATDHYRREQKYKESENPDCKPLPSIVVCPPTLIGHWVYEVNKFI
DKEYLNPLMYAGPPVERLKLQKKAKKYNMIVASYDVVRNDIEFFSSFSWNYCVLDEGHII
KNGKTKISKAVKQLNCNHRLILSGTPIQNNVLDLWSLFDFLVPGFLGTERQFQARYGKPI
LASREAKSSSKEQEAGALAMETLHRQVLPFILRRLKEDVLKDLPPKIIQDYYCDLSQLQV
KLYEDFSKSQAQKGIEDCVTSTKVVEPKKGSTHVFQALQYLRKVCNHPALVLNTGHPKYT
EVMGMLKTQGSNLHDISHAPKLTALKQLLLDCGIGVEESAGQPGTNTPVVNQHRVLLFCQ
LKGMLDIVEKDLLKVQMPSVTFLRLDGTVPAGSRHDIVNRFNNDPSIDILLLTTHVGGLG
LNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKL
TIANTVISQDNASLNTMGTDQLLDLFTLEDKKKGESSAPSDSKISEKKETVKSILEGLGD
LWEDDQYQSEYDMKNFMKSLV
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atgacaacacgacttgatagattatttttactgttggacactggctctactgctttgatc
aggaaatctgcagcagaacaattaggagatgtccaaaaactacacccttatgagcttaat
aacctccttacaaaggtgcttgtttatctgagaagcagtaattgggatactagaattgct
gcagcacaagctgttaatgccatagccagaaatgttcctcagtgggagccaagaggtgct
ccaaaacaagaatgtggagaagatatacctggagctgaggggaagttgttgttttcaaag
tttgatctacaatgtgtactacaaaatggaacatcattacttggatctgaaggtgtacag
tttaatcaggatgacaaacttacaggcattgatgaacgagaaagattgttgattcaaaga
cagatgttaaataaacgtctaggtcttgatgtggcaggaaatcttcagcttgatatagac
aaggacttatattctgatgaagatttacttactggcatgaataaagaaacagctttcaaa
caagaattgaaacatgtaggtgaccttgtaaatcaacagattggttccagtcttagctct
agagagaggaaccgagctaaacgcaaagcaagaatgatgattaaaagaccatccagagag
tctcctctccccgacagtgaaaatgagcctccagtgaagaaaatgaagtcagaaaatggg
tcagaaaatacaggaataattagtgatctgacagaggaggaggactggccatttgattgt
ttctgtgaactgttgatggctgatttatttcacactgcctgggagactagacatggagct
gctactggtctaagggaggtaattaagttgcatggaagaggagcaggcaagtctcaggat
acacccgctgatcagatgtcagcagtcaaccaaatatggttatcagatttagcactcagg
ttattatctgtgatagcactcgatagatttggtgattatgtctcagatgaggttgttgct
ccagttagagaaacatgtgctcaaacacttggagtagtgataaagtttctagaagctgac
ggtatacaaggggtactatgcatcttgttacagctgttaacacaaaaacaatgggaggtg
cggcatgggggattgctcggaatgaaatatctgctggcagtaagaaaggatatgacaggc
gatttactacctaaagtattaccatttatatatcaaggattacaagatgctgatgatgat
aacagggctgtggctgctagtgcattaattcctgtagctgatgatctcgtacaaatactt
ccacagcaggttcctgtgatagttttatgtctatgggagactttactggacctagatgac
cttacagcatcaacaaacagcataatgacacttctctcagccctggtagcccatccaaaa
gcaaatgtgatagatgtgactgaaaagccattaactgaacttgtacctcggctattgcca
ttttttcgacacaacattccgtcagtaagaactgcaacaatgaagacattacacactctt
ttaactatgcaatctacaaagcaatctgttgataattggttacctaatctccttcaacca
ttattgtgccatgtttaccagagatctttgttagaaacacatcctgaaatcctctctgtt
ataacagaggtttggaactgtatgctgcaccggtcaccaccggaatacctggtggtagca
gctacaccatggatgggggtctggttgtccctggctatgcaaccgtcaaaaataccttat
gaccataactatctggtagaggcaaaacatcctggcaggatatcttttgtaatgagaaaa
gggaacacagcagctcaactgctgggatgtttgtgtagtaagattacccagccaatacaa
ggtcttcctgacaattgtgagaaaccttcagaatctctagacaaacttctagtcttccat
ctgaacacaaagtcagctatacagagaattgtaatagctgaagtggtacatgcctgggct
gctacaaagtcatgtgaatgctcaactgatatcaaaagcaagctgttagaaactctcaca
gaaggaatatattatgatgaaatagcactggggtttacacgtttgcaaacagaatgtagg
gactttattgcctctctcaaacaacaaggaatcaacatggaccaaatcatagctcctggt
accaaactttgtttctctattaaaacctgtttttccatgatttacctcactagggtacag
tcaagtttagccaaagctgttgtgtcattagatgccatccctgaaaagttaaatccagtt
atccgccctttgatggactgtataaagaaagaagagaacatttacatacagagggacggt
ggtaaatgtgtgagtggattattgaggaaatgtttatctagagatccttgtcctaacaac
aaagtcatcaagaacctgtgtgctttcttgtgctgtgatccttcagtaacacctgtctgt
acacagactaacaataactctacttcagaagctagctgtgatatgtacaaagagaatctc
actcttgccaaacttaataaaatcccagacacagataagaaacgtttacagaggtcatca
agtgtgaagaatgatgttacagtatcacctgatttactgaaagatgaggaacaggtatac
tttaattatcttcatttatcacatacctgtgcaactttcgcgactccgttaaaatggtat
tgcgtggctatgcatatattttggcgcgacgccattcaatcaaaacagctgttatctatt
cagcggcgtggaggggagataactttgaatattttgacgtccgattttaatgacaaactt
cctcaggaacttcctagtctatgggaaactgctacaaagtatcttcttgaaaatcaagat
tctgtagctgatatgacagatttggttgcccaggaaacagtcaactgtttacaagtggta
gagtctattgtgccatctatacattcatctttactcaccaagtttgttgacagtttgcct
tgtctccagtgttatctacagaataagtatagtggtgtgcgtcacatgtcagctaggtgt
gttggtatgttatctcgactgtcgacagcagatgtgatgctgtttcttatagagaaagtg
ctgccaatgttcgaggcgtcagacaatgatgtacaaagacaaggggcatcagaagctatt
gctaatgtaattgagaagttaaatatggatattataccatatattgtactactgatagta
cctgtactgggcaggatgacagaccaacatgaacatgttagaactgtagctacacactgt
tttgcttcacttatacgtttattacctttagagtctggtgttactaaccctccagatatg
aagtccagtctagttgagagaaaagtcaaagaaagagctttcctagagcagcttcttgat
ggaactaaaatagaaaactacaaagttgatgtgcccattaaagctgagctgagaaaatat
caacaggatggtgtaaactggcttggatttctgaacaagtacaagttacatggtatatta
tgtgatgatatgggactagggaaaactttacaatctatctgtataattgccacagatcat
tatagaagagaacagaaatataaggaatctgaaaatcctgactgcaaacctttgccatcg
attgtcgtatgcccaccaacattgataggtcattgggtatatgaggtgaataaatttata
gacaaagagtacctcaatccactcatgtatgctggacctcccgtggaaaggctcaagtta
cagaaaaaagcaaagaagtacaacatgattgttgcttcctatgatgtggtacgcaatgat
attgaattctttagctctttcagttggaattattgtgttctagatgaaggtcacatcata
aaaaatggtaaaacaaagatctcaaaagcagtaaagcagttaaactgtaaccatagattg
attctgtctggtaccccaatacagaataatgtccttgacctttggtctctctttgacttt
ctggtaccaggctttctaggcacagaaaggcaattccaagcaagatatggtaaaccaatc
cttgctagcagagaggcaaaaagttcatccaaagaacaagaggctggagctctggctatg
gaaactttacatcggcaggtacttccatttattttacgacgtctgaaagaagatgttctg
aaagatctacctcctaaaattatacaggattattattgtgatctaagtcaactacaggtg
aagctgtacgaggacttctctaaatctcaggcacagaaaggtatagaagattgtgtcacc
tctacaaaggtggtggagccaaagaaaggatcaacccatgtcttccaggcattacagtat
ttacgtaaagtatgcaatcatccagcacttgtattaaacactggtcatcctaaatataca
gaagtgatgggcatgttaaaaacacaaggttctaaccttcatgatatctcacatgcacca
aaacttacagcattaaaacagttgttactggactgtggtataggtgtagaagaatcagct
ggtcaaccaggtacaaacaccccagtggtcaatcaacatcgagtcttgttgttctgtcaa
ctcaaaggaatgcttgacatcgttgagaaagatctgctcaaagtacaaatgccttcagtg
acattcctaagattggatggtacagtacctgctggttccaggcatgatattgttaacagg
ttcaacaatgatccatccatcgatattcttctgctaacaacacatgttggtggactggga
ctcaacttgactggtgctgatacagtgatatttgtagagcatgattggaacccaatgaaa
gatttacaagcaatggacagagcccacagaattgggcaaaagaaagttgttaatgtatat
agacttatcacaagaggaacacttgaagagaaaattatggggcttcagaagtttaagctg
actatagctaacacagtaatcagtcaagataatgccagtttaaatacaatgggtacagac
caactactagacttgttcacactagaagacaagaagaaaggggagagttcagctcctagt
gacagtaaaatcagtgagaagaaggaaacagtgaaatctatccttgaaggactcggtgat
ctatgggaagatgatcaatatcagtcggaatatgacatgaaaaattttatgaagtcattg
gtgtaa
DBGET
integrated database retrieval system
