Ruditapes philippinarum (Manila clam): 132739732
Help
Entry
132739732 CDS
T09557
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132739732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132739732
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132739732
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132739732
mRNA degradation factors
3'-5' decay
Ski complex
132739732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
132739732
NCBI-ProteinID:
XP_060583503
LinkDB
All DBs
Position
Unknown
AA seq
1264 aa
AA seq
DB search
MANGEPGFDMNFDLVEVGVSGSVQVCPKIDRSKERIQLPLKTVPLGLPPVLPKIEDEFEK
FLTNLEELPIHDVDRAQKFIPRVPDPLNLLHTDVTSLQTTIQVERNPTTGKLLGYKEEYL
PDMGKTAQNSLSLHRAPDPTSTGDVRGSSLNFPFWPGGQDEPELESLLKATDNVDINFET
DLLTVAPGLLEGMNFTVTPQKHTVEDATSVTEQPKVMTLADIMTLGDDLDDLELGDDEDY
DKEIEETKETSKESVKLQRSESLEKLVDTPADKGNDSPSSAPVRRAEPKEEWAINIDVKQ
PVDDFYKRIPDMAYTWPFEPDVFQKQAILHLESHDSVFVAAHTSAGKTVVAEYAIALSLK
HMTRTVYTSPIKALSNQKYRDFKQTFNDVGLITGDVQINQTAACLIMTTEILRSMLYNGS
DVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPQHVNIILLSATVPNTIEFAAWIGRTK
KKKIYVISTTKRPVPLEHFLYTGNSNKTSSELFRIVDAKGSFSTTGYQKAIDAKKERASK
SSQSFGAKGHRGGHPSQDKNVWLSVIDMLKKKEKLPVVAFTFSKKKIDENANNLHSLDLT
TAKEKSEIHIFFHSSIKRLKGSDQQLPQVLHMEDTLKRGIGVHHSGILPILKEVVELLFQ
KGLVKILFATETFAMGVNMPARTVVFDSIRKHDGTHFRDLLPGEYIQMAGRAGRRGLDTT
GTVIILCKGDVPEMSDLHKMMLGKPTLLQSRFRLTYSMILNLLRVEQLRVEDMMKRSFSE
FHSQKDVAKRKEDLQVLHKKVSDLEDIECFMCSNDLETYWEACRDYHDLQKHLQGIILSH
PAAVKALSPGRVVIVNHAVNNEVLGVVLKSSSGANNERNFTILVICDKNSDSSKNSDSAI
NSNSAINSNKSEESNAVAPVIKTKLFQPEGACWHEMVQCKADSIAIVTTKTIRIDGEKII
NDVKKREQPRFRNDPPSQSVTTATQELLRLTETNSDGLPGLDPIKDLHLRDIELVEKFRS
LELMKEKFSKYNCVNCPRFTEHFSQISSNMKLKEDYKRLQFLLSDASLTLLPEYQQRVEV
LKALNYIDEHNAVQLKGRVACEISTHELMITELVFENALTDLHPTEIAALLSSMVFEQKN
CSEPRLIDTLEKGRDKILEKAGQISKIQKQMGMQVDSEYEETFKFGLMEVVFEWARGIPF
SEITNLTDVQEGIIVRCIQRLHETLRDVRNAARIIGDPVLYQKMEEASSMIKRDIVFAAS
LYTQ
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacggtgaaccaggattcgacatgaactttgaccttgtagaagtaggcgtaagt
ggttcagttcaagtgtgtccaaaaatagacaggtcaaaagaaaggatacagctgccattg
aaaacagtgccccttggtttaccacctgtccttccaaaaattgaagatgagtttgaaaag
ttcctcaccaacctggaagagttaccaatacatgatgttgatagggcacaaaagttcatc
ccaagggttccagacccgctgaatttgttgcacacagatgtgacatcgttgcagaccact
atacaggtggagcggaatcccactactggcaaactgctaggatataaagaggagtattta
ccagacatggggaagactgctcagaattcactgtcattacacagagccccagatccgacg
tctacaggagatgtcaggggaagtagccttaattttcctttttggccaggtggccaagat
gaaccagagttagaatccttgctgaaagctacagataatgtggacatcaactttgaaact
gacctacttacagtagcacctggcttattagaaggtatgaacttcacggttacacctcag
aaacacactgtagaagatgcaacctctgttaccgagcaaccaaaggtcatgaccttagct
gatattatgaccttgggagatgaccttgatgaccttgaacttggggatgatgaagattat
gataaagagattgaggagactaaggagacatccaaggaaagtgttaaacttcagagaagt
gaaagtttggagaagttagtcgacacaccagctgacaagggtaatgatagtccttcatca
gcaccagtcaggagggcggagccaaaagaggagtgggctatcaacatagatgttaaacaa
cctgtggatgatttctataagagaataccagacatggcttacacgtggccatttgaaccg
gatgtgttccagaaacaggcaatacttcatctggagagccatgacagtgtgtttgtagcg
gcccatacatcagctggtaaaactgtggtagctgaatatgcaatagccttatctcttaaa
catatgacaaggacagtgtatacatcacctattaaggcattgtccaatcagaagtaccga
gatttcaagcaaacattcaatgatgtagggttgataactggagatgtacagatcaatcaa
actgctgcctgccttataatgaccacagaaattctcaggtcaatgttgtacaacggatcc
gatgtgattagagatttagaatgggtcatatttgacgaggtccattacatcaatgatgct
gagagaggtgtagtgtgggaggaggtattaatcatgctaccccagcatgttaacattatt
ctacttagtgcaactgtacctaatactatagaattcgctgcatggatcgggagaacaaaa
aagaagaagatatatgttataagcacaacaaagagacctgtacccctagagcacttcctg
tacacaggaaacagtaataaaactagcagtgaactcttcagaattgttgatgctaaaggc
agttttagtactacaggttaccagaaagcaatcgatgcaaagaaagagagagcctcaaaa
agttcacagagttttggcgccaaaggtcacagaggaggtcacccaagtcaggataagaat
gtatggctgtcagtgatagacatgttgaagaagaaagaaaaattacctgtggtggccttc
accttttcgaagaagaaaattgatgaaaatgccaacaatctgcatagcctggatctgacc
acggccaaggagaaaagtgaaatacatatcttctttcatagttctatcaaacgactgaaa
ggttctgatcaacaactacctcaggttttacacatggaagatacattgaagaggggtata
ggagtacatcatagcggtattttacctatactgaaggaggtggtagaacttctgtttcag
aaaggtcttgttaaaatattatttgctacagagacatttgctatgggtgtcaacatgcca
gccagaactgttgtgtttgactccatcagaaaacatgatggcacacattttagagatttg
ttacctggagagtatatacagatggcaggtcgggctggaagacgtggccttgacacaact
ggcactgtaatcatactgtgtaagggtgatgtaccagaaatgtctgaccttcataaaatg
atgttgggcaagccaacactgttgcagtcccgattccggttgacatactcaatgattctt
aatctactacgtgttgagcagctacgtgtggaggatatgatgaaaagaagcttctcagag
tttcacagccagaaagacgtggcaaaaagaaaagaagatctacaagtgttacataagaaa
gtgtctgatctggaggatatagaatgttttatgtgttctaatgacctggaaacatactgg
gaagcttgcagagactatcatgatctacaaaaacatcttcagggtattattttatcacac
cctgcagctgtgaaagcattgtctccaggacgtgtagtcatcgttaatcacgcagtaaat
aatgaggtgcttggtgttgtattaaaatcatcctctggtgccaacaatgaaagaaacttc
acaattttagtcatctgtgataaaaatagtgatagttctaaaaatagtgacagtgctata
aatagtaacagtgctattaatagtaacaaatcagaagaaagtaatgctgtggcacctgtg
ataaaaacgaaattgttccaaccggaaggagcctgttggcatgaaatggtgcaatgtaaa
gctgactctattgccatagtaacaacgaaaacaataagaattgatggtgaaaagataatt
aatgatgtgaaaaagagagagcaaccaagattcagaaatgatccaccctctcagtcggtt
accacggcaactcaagagcttctacgtttaacagaaaccaatagcgatggactacctggc
cttgacccaattaaagaccttcatcttagagatatagagctggtggagaaatttcgatct
ttagaattgatgaaggaaaagttctccaaatataactgtgtaaattgtcctagattcacg
gaacattttagtcagattagctctaatatgaagttaaaggaagattataaaaggctacag
ttcttgttgtcagatgccagtttgactttactaccagaatatcagcagagagttgaggta
ttaaaggcgctgaactatatagatgaacataatgctgtacagttaaagggacgtgtggca
tgtgaaatatccacgcacgagctgatgatcactgaactcgtgttcgagaatgcactcact
gacctacatccaaccgagatagcagcattgttgtcgtcaatggtgtttgaacaaaaaaat
tgcagtgaaccacgactgatcgatacactcgaaaagggtagagataagatattagagaag
gcaggacaaattagtaagattcagaaacaaatggggatgcaggtagattcagaatacgag
gaaacgtttaaatttggccttatggaagttgtatttgaatgggcaagaggaattccattt
tctgagatcactaacctgacggacgtgcaggaaggaattatagtgcgttgtatacagcga
cttcacgagactttacgagatgtccgtaatgcggcacgtataatcggtgatcccgtcctc
taccagaagatggaggaggcgtcctctatgattaagagagacattgtgtttgcagcctcg
ctttatacacagtga
DBGET
integrated database retrieval system
