Ruditapes philippinarum (Manila clam): 132740503
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Entry
132740503 CDS
T09557
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8-like isoform X1
KO
K18734
protein SMG8
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132740503
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132740503
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
132740503
NCBI-ProteinID:
XP_060584399
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MSAVEATTNSFPVKHDFVPSQFKDNKVCVVSIIGKSQYKTATSKASLFNPILDADIFKGV
EGYLEDSINQGDIECYYDIDSNVVYLHLTSILDSYRLTSVCQRLKDASVKDFQTLWQQED
CHNAKCLLFMFQVSHILVISHPGSSFDVTYVILFRILDSIRMKVQKCVTEQLLDLPISKD
WKYNGRPCSPRVLFVFETSTIEYDPEELVENTGYKARPQRIHPIKRLQHCMEDQIYKILR
KSRVITNISNNSLFAVPANQEFVFIHVYQNEAADPVSFFLQQIRENTLQHDADSDLPRKS
YQSNRRGQGGIDRSRSQGLSRNGGEFSFKEFIWQHIDMALTKGFDDNVGRHPVTATFELA
TSETWFTLANKLYLMLFSEKLDPKLQPHCNTLRSLLETDLRFSENRCNKVLPVAESSYQE
NLPTHYVTNYHLSKLAQAKKVFSQFARGPACDKYMKQLEDSCERFWKNGRQLCEEISLTG
NHCVNPLHKTEDEIDTESNSHLPLMPHSSQLKMKAACNCGKKQADKEDPFNHKAANYDFY
VKLEEMCCGKLERYEFPVFQASSTDIRAALLTPPVRSKAQPPKLQKESVSSAGKGEVAGV
TQGMASLSLALSLDMSFPSSCQSGGSDLFAHGGQSNCSPLPDQDDATPNPDQPEAHSPSS
PLSPTPLRQHSTTEYLPGMIHTESPVGLLPKFPSWSLVCLGKSSLYNHTQGLDLPGFLSG
SNFLLPWDITVQAERDKWPTVGETTGKKGKQKKGTRGKGN
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagtggaagccacaacaaattcttttccagtaaaacacgattttgtgccaagc
cagtttaaagacaataaagtatgtgttgtgtccatcattggaaagagccagtacaaaaca
gctacttctaaggcatctttattcaacccaattctagatgccgacatattcaagggtgtg
gagggataccttgaggatagtataaatcaaggtgacatagagtgttactatgatattgac
agcaatgtggtatacctacatctcaccagtatactagattcttacagattgacgtcagtg
tgccagagacttaaggatgcctctgtaaaggattttcagacactatggcaacaagaggat
tgtcacaatgctaagtgtctactcttcatgtttcaagtttctcatatacttgtgatatca
cacccaggttcatcttttgatgttacatatgttattttattcaggattctggactctata
aggatgaaagtacagaaatgtgtaacagaacagctcctagatctaccaatctctaaagat
tggaaatataatgggcgaccatgttcaccaagagttctctttgtatttgagacatcaact
atagaatatgatccagaagaattggtggagaacactggatacaaggcaagacctcagaga
atacatccaatcaaaaggctgcagcactgcatggaggatcagatatacaagatcctgaga
aaatccagagttattaccaatatcagtaacaattcactgtttgctgtgccagccaatcag
gagtttgtatttattcatgtgtaccagaatgaggccgctgacccagtttcatttttcctg
cagcagatcagagaaaatacattacagcatgatgcagattcagatctgccaaggaaaagt
tatcaatcaaatagaagaggtcaaggtggtatagacaggtcaaggtcacaagggctctcc
agaaatggaggagaatttagttttaaggagtttatatggcaacatattgatatggcactg
acaaaaggttttgatgataatgtgggacggcacccagtcactgcaacctttgagcttgct
acaagtgagacgtggtttaccttggcaaacaagttatatcttatgttattctcagagaag
ctagatcctaaactccagccacactgcaatacactccgatctcttctcgaaacagatctg
agattctccgagaatcggtgtaacaaggttttaccagtagcagaaagttcctatcaggaa
aatttacccactcattatgtcactaactaccatcttagcaagttagcacaagcaaagaaa
gtattcagtcagtttgctagaggtcctgcctgtgataaatacatgaaacagctggaagac
tcatgtgagagattctggaaaaatgggagacaactctgtgaggaaatcagtctgacaggc
aatcattgtgttaatccattacataagacagaggatgagatagacactgagagtaactca
caccttcccttgatgccacattctagtcaactcaagatgaaagccgcttgtaattgtggg
aaaaaacaagctgataaagaagatccatttaatcacaaggcagccaactatgatttctat
gtaaaactcgaggaaatgtgttgcggaaagttagagcgttatgaatttcccgtgtttcaa
gccagcagtaccgacatacgggcagcattacttacaccaccggtcaggtctaaggctcag
ccacccaaacttcagaaggaatcagtctctagtgcgggtaaaggagaggtggctggtgta
actcaaggcatggccagtctcagtctggcattgagtctagatatgtctttcccatcctca
tgtcagtctggtgggagtgatttgtttgcacatggtggacagagtaattgcagccctcta
cctgatcaagatgatgccacacctaatccagatcagccagaggctcattctccatcttcc
ccattaagcccgacccctcttagacagcactctacaacagaatatttacctggaatgatc
catacagagtcaccagtggggcttctacctaagtttccatcatggtcgctggtttgtctt
ggaaaatcaagtctttataatcatacacaaggtttagatcttccagggtttttaagtgga
agtaattttctgttaccctgggatataacagtacaagcagagagagacaaatggcccaca
gtaggggaaactacaggcaagaaaggaaaacagaagaaaggaacacgggggaaaggtaac
taa
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