Ruditapes philippinarum (Manila clam): 132740795
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Entry
132740795 CDS
T09557
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132740795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132740795
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132740795
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132740795
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_22
PWI
AAA_19
GIPC1_GH2
AAA_30
Flavi_DEAD
nSTAND_NTPase5
nSTAND3
SRP54
T2SSE
Motif
Other DBs
NCBI-GeneID:
132740795
NCBI-ProteinID:
XP_060584766
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MSAIETWVNDKLHDILGISDKYIAQYLIGLAQKSKSSEEYIQKLKDTGTIDVDENVAVFS
SELWHKIPHAAVKESSSKAHARTVLEQQQKNQSYQLLSDDDEDDDGPEKFIKPSKRSKSD
KKGRHLRKRKEESSSESDGETVIQRKRGRREEPAAVESSEDEYEKIEDDRQKDLEERDAF
ADRLKEKDKDKQRNVMSKSEKKAYEEATKRLHLETEDRKKIIPEIRKKSRRDYLKKRHVD
KLEELEADVLDEEYLFGDQKLSEKEKRELEYKKKVLRLAKEHKSAGDMEKVNRYFIPKED
DKPSDKYFEEDGPKGPNSEQMKWEEEHVGAALMSFGAKDSKQKAKEKNKVKEYDVIMDEE
IEFVQALQMPGTITEKGEKEQKLSESQKKKLSIKETQRSLPIYPFKQSLLEAVEQFQVLI
IEGETGSGKTTQIPQYLYKAGYCKDGMKVGCTQPRRVAAMSVAARVAEEMGFKLGNEVGY
SIRFEDCTSERTVVKYMTDGMLLREFLSEPDLKGYSVLIIDEAHERTLHTDVLFGLVKDI
ARFRPDLKLLISSATLDAEKFSQFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDAAVVSV
LQIHCTQDEGDILVFLTGQEEIETASEMLTERTRKLGSKIKELIIAPIYANLPSDLQAKI
FDPTPPGARKVVLATNIAETSLTIDGIKYVLDPGFCKQNSYNARTGMESLVVTPVSKASA
NQRAGRAGRVSAGKCFRLYTAWAYKNELEDNTIPEIQRTNLGNVVLLLKSLGINDLIHFD
FMDPPPHETLVLALEQLYALGALNHKGELTKLGRRMAEFPVDPMLSKMILASEKYKCSKE
ILTITAMLSVNNSVFYRPKDKVVHADTARQNFFLPGGDHITLMNVYNQWEETGHSTQWCF
ENFIQYRSMKRARDVRDQLEGLIERVEIEVSSNPLDTVNIRKAITAGFFYHTSKLDKGGN
YRTVKHNQTVMVHPNSSLFEDRPKWLIYHELVFTTKEFMRQVIEIDNSWLLEVAPHYYKA
KELEDGSGKKMPKNTGKSREEVTRTY
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgatcgaaacctgggtgaatgataaattacacgatattcttggaatatcagac
aagtatattgctcagtatttgatcggacttgcgcagaagtcgaagtcctcagaagaatat
attcagaaactaaaagatacgggaactatcgatgtcgatgaaaatgtagctgttttttca
agtgaattgtggcataagataccacatgcagcagtgaaggagagttcaagtaaagcacat
gctagaactgtgctagaacaacaacagaaaaatcaaagttatcagctcctatccgatgat
gatgaagatgatgacggtccggaaaagtttattaagccttcaaagagatcaaaatcagac
aagaagggtcgtcacctcaggaaaaggaaagaagaaagcagttctgaaagtgatggggag
acagtgatacaacgtaaacgaggtcgtagagaggaaccggctgctgtagaaagttcggaa
gatgagtacgagaagatagaagatgatagacagaaggatttagaggagagagatgcattt
gctgatagactgaaggagaaagataaagataaacagcgtaatgtcatgtcgaaatctgag
aaaaaggcttatgaagaagcaacgaaaaggttacatctagaaactgaagacagaaagaag
atcattccagaaatacgaaagaaatctcgacgagattacttaaagaaacgtcatgtagac
aaactagaggaattagaggcagatgttctagatgaggaatatctgtttggtgatcaaaaa
ctgagtgagaaagagaagagagagttagagtataagaagaaggtgttacggttagccaag
gaacataaatcagctggagatatggagaaagttaacagatattttatacctaaagaagat
gataaaccttcagataaatacttcgaggaagatggtccaaaagggcctaattctgaacag
atgaaatgggaggaggaacatgtgggtgcagcattgatgtcatttggtgctaaagattcc
aaacagaaagctaaagagaaaaataaagtaaaagagtatgatgtcataatggatgaagaa
atagagtttgtacaagcattacaaatgcctggtactataacagaaaagggagaaaaagaa
caaaagctgtcagaatcacaaaagaagaaattatcaataaaagaaacacagagaagttta
ccaatatatccgttcaaacaaagtttattagaggcagttgaacagttccaggtgttaatt
attgaaggagagaccgggtcagggaaaactacacaaatacctcaatatctttataaagct
ggttattgtaaggatggtatgaaggtgggatgtacacaacctaggagagtggcagcaatg
tctgtagcagctagagtggcagaggaaatgggattcaaactaggaaatgaggttggatac
agtataagatttgaggattgtacatcagagagaactgtggtaaaatatatgacagatggt
atgttgctgagagagttccttagtgaaccagatctcaagggatatagtgtgctgataata
gacgaggctcatgagagaactctacatacagatgttctgtttggactggtgaaagatatt
gcaagatttagaccagatcttaaactccttatctctagtgccacactagatgctgaaaaa
ttttcacagttctttgatgatgctccagtatttagaataccaggtagaagatttcctgtt
gatatttattacaccaaggcaccagaagctgactatatagatgcagcagtggtgtcagta
ttacagatacattgtacacaagatgaaggtgatattctagtgttccttactggacaagaa
gaaatagaaacagcaagtgaaatgttaactgaaagaactcgaaagctgggatcaaagatc
aaggagttaataatagcaccaatctatgcaaacctaccatcagacctacaagctaaaata
tttgatcctacccctccaggtgctcgtaaagttgtgctagctacaaacattgctgaaaca
tcattaactatagatggtataaaatatgtgttagatccgggattctgtaaacagaatagt
tataatgctagaacaggcatggaatcactggttgtcacacccgtttctaaggcatcagca
aatcagagagctggacgtgcaggacgtgtctcagctggaaaatgttttcgtctttacaca
gcatgggcgtataaaaatgaacttgaagacaatacaataccagaaattcagagaactaat
cttggaaatgttgtcttgttacttaaaagtttaggaataaatgatctcatacattttgat
tttatggacccacctccacatgaaacacttgtgttagctctagaacagttatatgcccta
ggggcactaaatcataaaggggagttaactaaacttggaagaagaatggcagaatttcca
gttgatccgatgctatcaaaaatgatccttgcctcagaaaagtacaaatgctcaaaggag
atacttacaatcactgcaatgttgtcagtgaacaactccgtcttctacagaccaaaggat
aaagttgtacatgccgacactgcccgtcaaaacttcttcctgcccggaggtgaccacatt
accttaatgaatgtttacaatcagtgggaggaaactggacattctactcaatggtgcttt
gaaaatttcatacaatatcggtctatgaagcgtgctagagatgtacgtgaccagctggaa
ggtttgattgagagagttgaaattgaggtctcatcaaatccgttagacacagttaatatc
agaaaggccataactgctggtttcttttaccacacttcaaaacttgacaagggaggtaat
tatcgaactgtgaaacataaccaaactgtgatggttcatccaaatagctccctgtttgag
gacagaccaaaatggctcatttatcatgaattggtttttacaacaaaagagtttatgaga
caggtgatagaaatagataacagttggttgctggaagtggccccacattactacaaagct
aaagaattggaagatggatctggaaagaaaatgccaaaaaatacgggaaaatcacgtgaa
gaagttactagaacttactaa
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