Ruditapes philippinarum (Manila clam): 132741014
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Entry
132741014 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132741014
Enzymes [BR:
rphi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
132741014
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
132741014
Prokaryotic type
tRNA splicing ligases
132741014
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
132741014
NCBI-ProteinID:
XP_060585076
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRTYQDELKYLEKVGNCAWRIKKGFVDNMNVEGLFFVNEVLEKLMFDELKQSCRSGGY
GGFLPGMKQIGNVAALPGIVGRSIGLPDVHSGYGFAIGNIYFCNSHNVXSVVSPGGVGFD
INCGVRLLRTNLTEKDVQPVKEQLAQCLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLQADPSKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIID
NFAAKKMGIEFKGQVCVMIHCGSRGLGHQVATDSLVVMEKVMKRDNILTNDRQLACAKIN
SQEGQDYLKGMAGAANYAWVNRSSMTFLARQAFAKMFNSTPDDLDMHVIYDVSHNIAKVE
EHFLDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEHGM
NETFGTTCHGAGRAMSRAKSRRNLDYTDVLNALEEQGISIRVASPKLVMEEAPQSYKNVT
DVVDTCHMAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtaaggacttaccaggatgaactgaagtatctggagaaggttggaaactgtgca
tggagaataaagaaaggctttgtagacaacatgaatgttgaaggtctgttctttgtgaat
gaggttttggagaaactgatgtttgatgaactgaagcagtcatgtaggagtggtggatat
ggtggttttctacctggaatgaaacagataggaaatgttgctgccttacctggcattgtt
gggagatctataggtctgccagatgtacatagtggatatggttttgctattggtaacatc
tacttttgcaatagtcataatgtataatctgttgtctcccctggtggtgtgggctttgat
ataaactgcggtgtacgtttgttaaggacaaacctcacagagaaagatgtacaacctgtg
aaggaacagctagcacagtgcctgtttgatcatatacctgtaggtgtaggctccaaagga
attatacccatgaatgcaaaagatcttgaagaagctttagagatgggaatggactggtca
ttgagagaaggttatatatgggctgaagacaaagaacattgtgaagaatatggccggatg
ttacaagctgatccatctaaagtcagtcctagagccaagaaacgaggtcttccacagctg
ggcacactaggtgctggcaatcattatgctgagattcaggtggttgatgaaataatagat
aattttgctgctaaaaagatgggaatagagttcaagggtcaggtgtgtgtaatgatccac
tgtggcagtcgaggacttggtcatcaagttgcaacagattccctggttgtgatggagaaa
gtaatgaagcgtgacaacatattaacaaatgatagacaacttgcttgtgccaagatcaat
tcccaggaaggtcaagattacctcaagggtatggctggagcagccaactatgcctgggtc
aacagatccagtatgactttcctagcaagacaggcttttgctaagatgttcaattcaacc
cctgatgaccttgacatgcacgtgatttatgatgtgtcacacaacatcgctaaagtagag
gaacattttctagacggcaagcagaagacacttttagtacataggaaaggttcgaccaga
gctttcccgccacatcatcctcttatacctgtagattatcagttgacaggtcaacctgtg
ttgattggaggaactatgggaacatgtagttatgttcttactggtacagaacatggaatg
aatgagacattcggaactacttgtcacggtgctgggagagcaatgtcacgagctaagtcc
cgacgtaacttggactatacagatgtattaaatgcactggaggagcagggaatcagtata
cgtgtagcatcaccaaaacttgtcatggaggaggcaccacaatcttataaaaatgtaaca
gatgttgttgatacatgtcatatggctggtataagtaagaaagctatcaaacttcgacca
atcgctgtgatcaaaggatga
DBGET
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