Ruditapes philippinarum (Manila clam): 132741052
Help
Entry
132741052 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like
Organism
rphi
Ruditapes philippinarum (Manila clam)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Ldl_recept_a
Collagen_trimer
fn3
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
132741052
NCBI-ProteinID:
XP_060585120
LinkDB
All DBs
Position
Unknown
AA seq
1362 aa
AA seq
DB search
MDNRALVSAVLLLIGIFGTSAQRRGDTGTLSPPRNVRARLQSPQAILIEWNEPETTYEIQ
GYKVLYTTDRYLPIHLWMVQEVSGDNKMTTISGLKPDRNYVISVLVLSSVGPGPMSNPVE
VMTRQVAKCAEGEFTCGDGMCLEKVSRCDGFPDCEDESDEKECPGGTVCFEGQELCEDHL
RCINPDQKCDGIPDCNDHSDEANCPDTGKAHHVDILSLIGMPSEAAGITYSVALGGFPSF
AITSRATIKEASSAEYFHGDKLYKDFAITTTVRLKNDYATLFSVMDPFGVNQFGVQLDKT
LQNSKPRTAVTVYYTSSNNGRTRRSEILGNTFYIPDIYNQWTILGIKVKGDTISLYKSCE
LVETKSTRPRDQLNFERGSALYFGRTRSGSKNFVGDIMELKVHEDPTKAENGECDELNRG
SGSGSDDEDLTVTDLYDNSIEVDNVPEPVQTVRGEKGEQGMKGEHGMKGEQGMKGEPGPC
CGAGTPPPIGPPPDPTPIMGQKGERGGMGFPGANGNDGLPGLKGEPGDRGDTGAPGIPGP
QGPPGAKGDSGDRGPPGLTIIGPPGPPGEPGLTPEQLPIPEVQKGQKGDIGIAGLPGSDG
RDGNPGPPGPVGPRGESIRGDPGLPGPAGEPGTPGRNGLLGPPGPPGPPGPPGPSGPARP
TSLPLIVDPDTIDGSGEISGTGEKGEKGDAGPRGPAGIPGEPGAAGPRGMPGESGVRGPQ
GQVGPMGPQGTPGKPGVFEGDLEDLRGDPGQPGVSGPPGPAGMPGPAGVPGLPGVPGTKG
DKGQDGYPGEPGVPGYEGPAGPNGAPGRDGRPGQDGKPGVPGPPGPPGPVVEITGEVQSG
QQGPTGPSGPRGLPGPQGQVGLPGAQGDPGMKGDKGDMGARGERGHTGDQGADGMPGSPG
VPGERGSPGVAGLQGPPGEPGIPGNHGMKGQRGDQGEHGLPGNSTIGPEGQLVDPALRVN
PGSSRASRSQLFHYDIDLDTEGSGELAVGGSNCGNGEPGVKGEPGEKGEKGDTGATGPKG
SMGDTGEPGRPGPVGPEGLMGPQGEPGSTGIMGPKGDMGDRGLPGLTGPAGPPGPASLLS
GQEAVAGQKGEPGEIGPIGPIGPRGPPGKQGEIGYPGFPGPRGFRGFPGRKGERGYGTPG
RKGDPGPPGPPGAAVSSAGEGSKGEPGVPGRDGKPGEKGDSGDVGPRGPPGLPGTPGILS
DQGTFGGQGPIGPQGPPGPQGPPGYPGRDGLPGRDGVGERGPMGPPGPAGDGSGKMGPPG
PPGPPGRPASGDDSSSSSGAPVQFQNADELQRGARRAHIGTLAFVMNTESLYIRVSQGWR
SVSLGTDLIELLPETPKNIVLPFERENSTTSSATTVVSVNSC
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggataacagagcacttgttagtgctgtacttttgttaattggcatctttggtacatcg
gcgcaaagacgcggtgatacaggtacattatcacccccaagaaatgtgagagcccgtcta
caaagtcctcaggctatactcatagagtggaatgagcccgagacaacttatgaaattcag
ggatataaagtgttgtacacaacagatagatatctaccaatccatttatggatggtccaa
gaggtatctggggacaacaagatgacaactattagcggcttgaaacctgacagaaactat
gtaataagtgtactggtcttgtcaagcgtaggcccgggtccaatgtccaatccagttgaa
gtgatgaccagacaagtagcaaaatgtgctgaaggagaatttacatgtggggacggaatg
tgtttagaaaaggtcagtcgttgtgacggatttcccgattgtgaagatgagtcagatgag
aaagaatgtcctggtggcacagtgtgttttgagggtcaggaattgtgcgaagatcacctc
cgctgtataaatccagatcaaaagtgtgacggaatcccagactgtaacgatcattctgat
gaagcaaactgtcctgacactgggaaggcacatcacgttgacattttaagcttgattgga
atgccgtcggaagcagctggtattacatattcagtagcattgggtggatttccgtcattt
gccatcacgtcaagagcgacaataaaagaagcctcttcagcagaatattttcacggcgac
aaactttataaagattttgctatcacaactactgtgcgacttaaaaatgactacgcaact
cttttctccgttatggatccgtttggtgtaaatcaattcggtgttcagttagataaaact
ttacaaaattctaaaccaagaactgctgtgactgtatattacacatcatcaaataatggt
cgcacgcgaaggtctgaaatattaggcaacacgttttatatacctgatatatacaaccaa
tggacgatacttggaataaaagtgaaaggtgatactatttcgttgtataaaagctgcgag
ttagtcgaaacaaagtcaacacggccacgagatcagctgaacttcgaacgaggatcagcc
ttgtacttcggtagaacaagatcgggctcaaaaaattttgtaggtgatataatggaactc
aaagtacacgaagacccaacaaaagcagaaaacggcgaatgcgacgaattaaaccgaggc
tcaggttccggtagtgatgatgaagatttaactgtgacagacttatatgataatagtatt
gaggttgataatgtaccagaacctgtccagactgtgagaggtgagaaaggtgaacaaggc
atgaaaggtgaacatggtatgaaaggggaacaaggcatgaaaggggaaccagggccgtgt
tgtggagcaggaacaccacctcccataggaccgcccccagatcccaccccaataatgggt
caaaaaggagaaagaggtggaatgggtttccctggtgcaaatggtaatgatggcctgcca
ggtttaaaaggtgagcccggggatcgcggagacacaggagcacctggtataccaggacca
caaggaccacctggtgccaaaggtgacagcggagatcggggtccacccggtttaacaata
ataggcccaccaggacctccaggtgaaccaggactcacaccggaacagctacctatacct
gaagtccaaaaaggtcagaaaggtgacattggaattgccgggttaccaggctcggatggt
cgtgatggaaacccaggaccacctggacctgtaggacctaggggagagtcaatacgaggt
gaccccgggttacctggaccagcaggtgaaccaggcaccccaggacgtaatggcttgtta
ggaccaccaggtcccccagggccaccaggaccccctggcccaagtggacctgccagacct
accagtcttcctttaatagttgatccggacactatagatggttcaggggaaatatcagga
actggtgagaaaggtgagaagggagatgctggtcccaggggaccagctggcattcccggg
gaacccggagctgcaggccccagaggtatgcctggagagtcaggggtaagaggaccacag
ggacaggttggaccaatgggaccccagggtacaccaggtaaacctggtgtgtttgaaggt
gatttagaagatctgagaggtgacccaggacaacctggagtatctggacccccaggacct
gctggaatgcccggacctgctggagtacctggattacctggtgtgcctggaactaaagga
gataagggtcaggacggttatccaggagagccaggtgtcccaggatatgagggaccagct
ggtcctaacggtgcaccaggacgtgatggtcgcccaggacaagacggaaaaccgggagtc
ccaggtccaccgggaccacctgggcctgttgtggagattactggtgaagtgcaaagtgga
caacaaggaccaactgggccatcaggtcctagaggtttacccggacctcagggtcaggta
ggactcccgggtgctcagggagatcctggcatgaaaggagacaaaggtgatatgggggct
agaggagaaagagggcacactggagaccagggcgctgatggcatgccaggttcgcctggg
gtaccaggtgagcgcggttcccccggagtggccggtcttcaaggtccaccaggagagcct
ggtatccctggaaaccatggaatgaagggacagagaggtgatcagggagagcatggtctt
ccagggaattcaactatcggacctgagggccagctggtagacccggccctccgggtaaac
cccggttcctccagggcctcgaggtcccaactgttccattatgatattgacttagacaca
gagggctctggagagttggcagtaggtggatctaattgtggaaatggtgaacctggtgta
aaaggtgaacctggtgagaaaggagagaagggcgacaccggagctaccggacctaaagga
tcaatgggagatacaggcgaaccaggacgtcctggtcctgttggacctgaaggtctcatg
ggaccccagggtgaaccaggatctacaggaattatgggtcctaaaggagatatgggcgat
agaggacttcccggtttaactggacctgctggaccaccagggccggctagcctactttct
ggacaggaagcagttgcagggcaaaagggagagcccggtgaaattggacctataggacct
atcggcccaagaggaccacccggaaaacagggtgaaataggctacccaggattccctggt
ccaagagggttccgcggcttccctggtcgtaaaggagaacgtggttatggtaccccaggt
aggaaaggtgatcctggacctcccggtccacctggcgccgcagtttcatctgccggagaa
ggaagtaaaggcgaaccgggtgtacctggacgagatggaaaaccaggtgaaaagggagac
tctggagatgtcggccctagaggaccacccggacttcccggaacaccaggaattctttct
gatcaaggaacgtttggaggtcaaggacctattgggccacagggtccacctggtccccaa
ggtccaccaggatatccgggtcgggacggtctaccaggacgggatggtgtaggagagagg
ggtccaatgggaccaccaggtccggcaggtgatggatctggtaaaatgggacccccaggc
ccgccaggacctccaggcagaccagcatccggggatgacagttcaagctcgtcaggggca
ccagtacagtttcagaatgcagatgagctgcagagaggggctcgtagggctcacattggt
acacttgcattcgtaatgaacaccgagtctttatatatccgagtttcccagggctggaga
agtgtttcgctaggtaccgacttgattgaactgctcccagaaactccaaagaatatagtt
ctacctttcgagagggaaaattctaccactagtagtgctacaacagttgtatcggtaaat
agttgttaa
DBGET
integrated database retrieval system
