Ruditapes philippinarum (Manila clam): 132741529 Help Entry 132741529         CDS       T09557                                  Name (RefSeq) ribonuclease 3-like   KO K03685   ribonuclease III [EC:3.1.26.3] Organism rphi  Ruditapes philippinarum (Manila clam) Pathway rphi03008   Ribosome biogenesis in eukaryotes Brite KEGG Orthology (KO) [BR:rphi00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     132741529  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:rphi03019]     132741529    03009 Ribosome biogenesis [BR:rphi03009]     132741529    03036 Chromosome and associated proteins [BR:rphi03036]     132741529 Enzymes [BR:rphi01000]  3. Hydrolases   3.1  Acting on ester bonds    3.1.26  Endoribonucleases producing 5'-phosphomonoesters     3.1.26.3  ribonuclease III      132741529 Messenger RNA biogenesis [BR:rphi03019]  Prokaryotic type   Bacterial mRNA degradation factors    RNA degradosome components     Ribonucreases      132741529 Ribosome biogenesis [BR:rphi03009]  Eukaryotic type   90S particles    RNase     132741529  Prokaryotic type   rRNA processing factors    132741529 Chromosome and associated proteins [BR:rphi03036]  Eukaryotic type   Gene silencing    microRNA pathway     Microprocessor complex      132741529 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Ribonuclease_3 Ribonucleas_3_3 dsrm RM44_endonuclase DSRM_2 Motif Other DBs NCBI-GeneID:  132741529 NCBI-ProteinID:  XP_060585703 LinkDB All DBs Position Unknown AA seq 1780 aa AA seqDB search MSNFGSPDFAALRQAVPGQMFGPRHSSPNIAGASSPLPPNVGPIPNVPPPGYPGPHMQLF NPMTMPPFPTGTQARAGLPWGAGVLPVQGLSMTIPPPIHFPRSIAQPQIQLPTANQIPAQ QQIVQLESNEVMSRDGDKQDHRHRHRHKRDDRHSHQEDKHHERKHHKERKSPKSSRHHSH ERKKSSRSRHRSDKSHNDKSSKSRRDHRHRRSPRTDDDLDEPVGVRYESRSESGAVLIED REGAILMEDRDSDYGRGQDKLEGPDHDVEDGEIYDDGPYETTYSENQNMDAGRHERRYED RYDKETRHSRDRGSSRSDRYRGDRVEDRRDGRHREMEERSSRHRDDGQWRRDDRHSSRDD RKGYDSYSTVDDLIREDDEFRRSLDYEEFPDEFDAYKYAVPADTRGNTRTDKYSRFDDEI RHSSIERRESRFERGRGRRGQTGAVLIEDRDDGAILIEDREPPSRRGTVLLEDGEELDKK YDKRNNSGHRGARLIEDRNENRGHAILLDDREDNRGHARLKEDRRDHGNHISKPVNNRQE FRSHESHREHTERERNLERDTHFDRNRRSHERGKGNDKRDGRNTENINRNQDLSTKEAAY IGEGQRNNRRESEDSRKDDGFERAKGFGKGRMPGRSEEQKRRGEAGGGRVSGEPVDAQRG RTGALLLEDKDEPSRDERPVSSGRTGAVLKEDKVNKVAADVGQRGSTFQGQRSNSRTDRK PNVVKRSQERSYGKQNNNRSRSSSQAKQEVRVKRERVSNENEEPEKKRKKVWEPGPNDVS VTKCIRSGSPVLKDDNDNDSNRIAAWVRCSPADLYFTKDPKTGNMVTTKRMRDLEQRFDH ELVQRAAMVRALQEPYERELPKPNWKNQCKGHTHHCGHCGEESDCSSSSSSSSSSESESD SEEWWMEEMKFKQKNPYRLHNEIWYNDPNELNYGPLCRCSNKARKFGIRHSIYPGEKPLP LCDVNSNNLDKLYHYRITVSPAKNFIISQPTVVMFDGHEYLFEGFSLFSHKPIPKLPECQ VIRFNIIYTIHVVEEQVPENFSVQSLDMFTEYLFDEILELVDIDWRGPGGEGHCRRFHVM PRFARPFPENGKELLSMNDVLLYLLKSSKSLLEPSELLNMYDLDNENWTKYVDSFRHMVV TCPGKRPSSIRIDQLDRSGCTPGDGELKLPFIIHHGVRPPQLSYAGDPVYKKKWREYMKF RHLLYSRAKVPDNEKQKLYDLEADLEKIRMKCTMKREVTIAVSSEGFLKTGIRADICQHA MILPVLFEHLRFHECLSELERSINYQFKDRSLLQLAMTHSSYKINYGTNPDHGRNSLSNC GFRQLEFGDHKTVTQHMRKRGLNILLRIMAKMGHKEEKRSEIPHNERLEFLGDAVVEFVT STHLYNMFPQASEGDLTLYRGSLVNNAHLAILADKLKLQEYLLYAHGPDLCHDSNLKHAM ANCFEALMGALYLDGGIELADRVFSRTCFQEEDLLDTWVNCPKHPLVADEPDGDRHWIEQ SHVLQKLVQFEDDIGYEFRHIRLLARAFTQRNVGYNNLTYGHNQRLEFLGDTIMQLICTD YLFKHFPDHHEGHLTLLRSSLVNNKTQSTVATELGMPDFVIKVNMTKAEKPLTNIDLKTK EKADLLEALYGALYVDGGLEPCQILTDICFFPRLEDFIADQEWNDPKSQLQQCCLTLRDM NDDSPDIPIYKVIRKYGPTNLRKYMVAVYFREKRLAVGVAGSKQQAEMVAAETALKEYQG LFHRSVYPSRAKNKAVIAAFRKEFQHEKQLQSSDVDTAKN NT seq 5343 nt NT seq  +upstreamnt  +downstreamnt atgtcaaactttggcagtccagattttgcagctttaaggcaggcggttccaggacagatg tttggacctagacattcaagtcccaatattgctggagctagtagtcctttaccaccaaat gttggtcctataccaaatgttcctccacctggatatcctggtccacacatgcagctattt aatccaatgacaatgcctccattcccaactggtacccaagcaagggcaggactaccttgg ggagcaggggtcttacccgtacagggactatccatgactattcccccaccaatacatttt cctagaagcatagcacaacctcagatacagcttccaacagccaatcaaattcctgctcaa cagcaaattgtccaattagaatctaatgaagttatgtcacgggatggggataaacaagat cataggcacagacaccgacacaaacgtgatgatcgacatagccatcaagaggacaaacat catgaaagaaagcaccacaaagagagaaaatcaccaaaaagcagtcgccatcacagtcat gaacgaaagaagtcctccagatcaagacacagaagtgacaagagtcacaatgataagagt tcaaaatcaagaagagatcacagacatagacgttctcctagaaccgacgatgatttagat gaaccagttggcgttagatatgaaagcagaagtgaaagtggtgctgtccttattgaagac agggagggtgctatactaatggaggatagagatagtgactatggaagaggtcaagataaa ttagaaggtcctgatcatgatgttgaagatggggaaatatatgacgatggtccatatgaa acaacttattcagagaatcagaatatggatgctggtagacatgaaagaagatatgaagac agatatgataaagaaacaagacatagcagagatcgaggaagtagtaggtctgacagatat agaggagacagggtagaagacagaagagatggtaggcatagagaaatggaggaaagatct agtagacatagagatgatgggcaatggaggagagacgatagacatagttctagagatgac agaaaagggtatgacagttattcaacagtagatgatcttataagagaggatgatgagttt cgtcggagtttagattatgaagaatttcccgatgagtttgatgcttacaaatatgctgtt ccagcagatactagaggtaatacaagaacggataaatattcaagatttgatgatgagata agacatagtagtattgaaagaagggaatctaggtttgagaggggtcgtggaagaagaggt cagacaggcgctgtgctaattgaggaccgtgatgatggggcaattttgatagaagatcga gagcctcctagtcgacgagggacagttttactggaagatggtgaggaactggataaaaaa tatgataaaagaaataacagtggacatcgtggtgcaagactcattgaagacagaaatgaa aatagaggtcatgcaatccttctagatgatagggaggacaatagaggccatgcaagattg aaagaagacagaagagaccatggtaatcacatatccaaacctgttaacaacagacaggaa tttagaagtcatgagtcacatagagaacatactgaaagagaaagaaatttggaaagagat acacattttgatagaaatagaagaagtcacgaaagaggtaaaggaaatgataagcgagat gggagaaatactgaaaatattaatagaaatcaggatctttctacaaaagaagctgcctat attggagaaggacaaaggaataatagaagggagtctgaagattctagaaaggatgatgga tttgaaagggctaagggttttggaaaaggcaggatgcctggtagaagtgaagaacagaag aggagaggggaggcaggtggaggcagggtatccggagaaccagtggatgcacaaagagga cgcaccggggcattgttgttggaggataaagatgaaccttcaagagatgaaaggcctgtt agctcaggaagaacaggtgctgtgttaaaagaagataaagttaataaagttgctgcagat gtgggtcaaagaggttcaacattccaagggcaaaggtcaaattctaggacagatagaaaa ccaaatgtagttaaacggtcacaagagaggtcatatggtaagcaaaacaacaacaggtca aggtcaagttcacaagctaaacaggaagttagggtgaaacgagaaagagtctccaatgag aatgaagaaccagaaaagaagagaaaaaaagtttgggaaccaggaccaaatgatgtcagt gtaacaaaatgtataagaagtggaagccctgtattaaaagatgacaatgataatgacagt aatcgtatagcagcctgggtaagatgttcacctgctgatctctacttcaccaaagatcct aagactggtaatatggtgacaacaaaacgcatgcgtgaccttgaacagcggtttgaccat gaacttgtacaaagggcagctatggtgagagctttacaggaaccttacgagcgtgaatta cccaaaccaaactggaaaaatcagtgtaaaggccatactcatcattgtggtcactgtgga gaggaaagtgactgtagttcatcatcatcgtcatcatcatcgtccgaatcagagtcagac tcggaagagtggtggatggaagaaatgaaatttaaacaaaagaacccatataggttacat aatgagatttggtacaacgacccaaatgagttgaattatggtccgttatgtcgctgcagt aacaaggctaggaagtttggtatacgtcacagcatctatcccggtgaaaagcctttaccg ctatgtgatgtgaacagtaacaacctagataaactgtaccattatcgtataacagtgtct cctgcaaaaaactttattataagtcaaccaactgtagtcatgtttgatggacatgaatat ctgtttgaaggcttctcattattctctcataaacccataccaaagttaccagaatgtcag gtgatcaggttcaatattatttatacaatacatgttgtagaagaacaagttccggagaat ttttcagttcagagtttggacatgtttactgaatatttatttgatgaaatccttgaatta gtggacattgactggcgaggtcctggaggtgaaggtcactgtaggagattccatgtcatg ccacgatttgcacgaccttttccagaaaatggcaaggagttgttatcaatgaatgatgtg cttttatatctgctaaaatcctcaaagtcattactagaaccgtcagagttactcaatatg tatgatctagacaatgagaactggaccaaatatgtggacagctttagacatatggtagtt acctgtcctggcaagagaccaagttctattagaatagatcaactggataggtcaggctgt acacctggagatggcgagttaaaacttccctttattatacatcatggtgtacggccacca cagcttagctacgccggagaccctgtgtataagaagaaatggagagagtacatgaagttc agacatttattgtatagtagggctaaagttccggataatgagaaacagaaactatatgac cttgaagcagatctcgagaaaataagaatgaaatgcacaatgaaaagggaagtaactatt gcagtatctagtgaaggatttttgaagacgggtattagagcagacatttgtcagcatgcc atgatattaccagtattatttgaacatctgagattccatgaatgcctctcagaactagag aggtccattaattatcagtttaaagacaggtcacttctccagttggctatgacacatagt tcatacaagatcaattatggaacaaatccagatcatggtcggaactcattgtcaaactgt ggtttccgacagctcgagtttggtgatcataaaactgtcacacagcacatgagaaaaaga ggtctgaacatattgttgagaataatggctaagatgggtcacaaggaagagaagagatcc gaaataccacacaatgagaggctggagtttctgggtgatgctgtggtggagtttgttaca agtacacatctgtacaacatgtttccgcaggcatcagaaggtgacctgaccttgtaccgt ggatctctagtcaataatgctcacctagccattcttgctgataaacttaagctgcaagaa tatcttttatatgcccatggccctgacctatgtcatgatagtaatctcaaacatgcaatg gccaactgttttgaagccctgatgggggcattatatcttgatggtggaatagaactagcg gacagggtgttttctagaacgtgttttcaagaggaggatcttctagatacctgggtaaat tgtccgaaacatcctttagtagcagatgagcctgatggggacagacactggatagaacaa agtcatgttttacagaaactggtacagtttgaagatgacattggttatgagtttagacac atacgtttattagctagagctttcacacagagaaatgttggatataacaatcttacatat ggacataatcagcgtctagagttcctgggagatacaataatgcagctgatctgtacagat tatctcttcaaacatttcccagatcatcacgaaggacatcttactttgttaagaagttca ttggtaaacaacaaaactcagtcaactgttgccacggagctaggaatgccagactttgtc attaaagtgaatatgacaaaagctgagaaacctctcaccaatatagatctgaaaactaaa gaaaaggctgatctgctcgaagcattgtatggtgccctgtatgtagatggtggcctggaa ccatgccagatactaacagatatatgcttctttcctagattagaggactttatagcagac caggaatggaatgatcctaagtcgcagctacagcaatgttgtcttacattacgagatatg aatgatgacagcccagatatacccatttacaaggttatcaggaagtatggaccaacaaat ctacggaagtatatggtagcagtgtatttccgagaaaagaggctcgcagtgggtgtggcg ggaagtaaacagcaggccgagatggtggcagcagaaactgctttaaaagaataccaagga ttattccacagaagtgtatacccttcaagagccaaaaataaggctgtgattgcagcattt agaaaagaattccagcatgagaaacaactccaatcatctgatgtagacacagcaaaaaat tga

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