Ruditapes philippinarum (Manila clam): 132741616
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Entry
132741616 CDS
T09557
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B-like
KO
K12821
pre-mRNA-processing factor 40
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132741616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132741616
Spliceosome [BR:
rphi03041
]
Complex A
U1 snRNP components
U1 related factors
132741616
Complex B
132741616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
WW_2
Motif
Other DBs
NCBI-GeneID:
132741616
NCBI-ProteinID:
XP_060585811
LinkDB
All DBs
Position
Unknown
AA seq
751 aa
AA seq
DB search
MLTVDYDNLIEKVFVKYLDKMANSGGGSGPPPMMRPPAPFPMAGPPGFIPPPGPADGAVP
PMMPPTAPPGFSAGGFPPMMPPPGIGMPPFPGPGNPMVASVQQANAASSSPGQVDQKPEK
KSPWTEHKAPDGRTYYYNNVTKQSSWEKPKDLQTETEMLLARCPWKEYKSDTGKVYYHNS
VTKESRWTKPKELEELEASIAKQREQERGESAASDAPASTEAPKPAKPLSTIEQAMQATL
ASIELPPPPKAVTQPKPVEKESSDSSSEESEEEKPVQKKPPVNLKFRNKKEAMDAFKSLL
KEKKVPSNATWENAMKLIVNDPRYGALKHLNERKQAFNEYKTQRVKEEKEEARLRAKQAK
EDLEQFLLHHDKMTSSVKYWKADSLFSDYDEWQAVNDRDRRELFDDVVHMLEKREKEDAK
TLRKRNIKVFNEILDSMPTLTNSTTWSEAQQMLLDNPRFTEDPDLQNMDKEDALVCFEDH
IRMLEQENDDEKERERRRLKRQQRKNREGFLVLLDELHEQGRLNSMSLWMDLFHIISSDI
RFQHMLGQPGSTPLDLFKFYVEDLKARFHDEKKIVKEILRDRGFMIEVNTTFEEFSNMIS
DDKRANTLDTGNIKLTYNSLIEKAEAREKERLKEEARKLRKLETAFKNMLQEATPAIEQD
NKWEDIRTRFENEAAFEAITLEAERIRLFKEFLVAVEEACMHRHPKKRKSKKHKSRRSRS
RSRSELPGETHLVSRRGGKQVKGTNFFPLTR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgttgacagtagattatgacaatttaattgaaaaggtattcgttaaatatttagacaag
atggcgaacagtggtggaggatcagggccacctccgatgatgagaccaccagctccattt
ccaatggcaggtcccccaggatttataccgcccccggggccagctgatggagctgtgcct
cctatgatgccaccaacagctccacctggttttagtgctggaggatttccacctatgatg
ccaccaccaggtattggcatgccaccttttccagggccaggtaatccaatggttgctagt
gtacaacaggcaaatgctgcatccagctcaccaggacaggtagatcaaaaaccagaaaag
aaatcaccgtggactgaacataaagccccagatggaagaacttattactataacaatgta
accaagcagtcgagctgggagaagccaaaagacttacagactgagacagagatgttgcta
gcaagatgtccatggaaagaatataaatcagatacagggaaggtttactatcataactct
gtcaccaaggaatccaggtggaccaaacctaaagaactggaggaattagaagcaagcatc
gcaaagcaaagggaacaagagagaggggaatcagcagccagtgacgctccagccagtacg
gaggcccctaaacctgccaaacctctgtctacaatagaacaagccatgcaggccacccta
gcctctattgagctaccacctccgccaaaagctgtcacacaacccaaacctgtggagaag
gaatcttcagatagcagtagtgaagagtctgaggaggaaaaaccagtacagaagaaaccg
ccggtcaacctgaagttccgtaacaagaaggaagcaatggatgccttcaaatcattgttg
aaagaaaagaaagtgccttctaacgcaacctgggagaacgccatgaagttgatagtaaat
gatccacgctacggggcattgaaacatctaaatgagagaaaacaagcatttaatgagtac
aagacgcagcgagtgaaggaagaaaaggaagaggccagacttagagccaagcaggcaaag
gaagatcttgaacagttcttgttacatcatgacaagatgacctctagtgttaaatattgg
aaagctgacagtttgttctcagactatgatgaatggcaagccgttaatgaccgggacagg
agggaactgtttgatgatgtggtacatatgcttgaaaaacgagaaaaggaagacgccaag
actctgagaaagagaaatatcaaagtatttaacgagatattggacagtatgcctaccttg
actaacagtaccacttggtcggaggcccaacagatgttattggacaatccaagattcaca
gaggaccccgatctacagaacatggacaaagaagatgccttggtatgtttcgaggaccac
atcagaatgctcgaacaggagaatgacgacgagaaagaacgcgaacgccggagacttaaa
cgacaacagcgtaaaaatcgtgaaggttttcttgttcttctcgatgagttacacgaacaa
ggacgtcttaattccatgtccctctggatggacttgtttcacataataagcagtgatata
agatttcagcacatgctcggacagccaggatctacacctctggacttgttcaagttttat
gttgaagatttgaaggcaaggtttcatgatgagaaaaagattgtcaaagaaatattgagg
gatagagggtttatgatagaagtgaacacaacatttgaagagttttcaaacatgatatca
gatgacaagagggctaacactctagatacaggcaacattaaactgacatataacagttta
attgaaaaagctgaagccagggaaaaagaaagattaaaagaagaggccagaaagttgagg
aaattagagacagcttttaagaacatgttacaggaggcaaccccagccatagaacaagat
aataaatgggaagatattagaacaaggttcgagaatgaggcagcatttgaggcaatcacg
ctggaggcagaacgtattagattgtttaaggagttcctagtggccgtagaggaagcatgc
atgcacaggcacccaaaaaagagaaaatcaaagaaacataaaagtagaagatccaggtca
aggtcacgttcagagttacctggggaaactcatctcgtatccagaagaggaggaaaacag
gtcaaaggtaccaacttcttccccctcaccaggtaa
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