Ruditapes philippinarum (Manila clam): 132742151
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Entry
132742151 CDS
T09557
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
rphi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132742151
09124 Replication and repair
03420 Nucleotide excision repair
132742151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132742151
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132742151
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132742151
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132742151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Castor1_N
Motif
Other DBs
NCBI-GeneID:
132742151
NCBI-ProteinID:
XP_060586461
LinkDB
All DBs
Position
Unknown
AA seq
400 aa
AA seq
DB search
MTEDDDKGYRWETEYEKTWEALQEDAEGSLQPSIDSMLHKAKRRKLLEKISNVRLGMMRH
MFIIIDMSVSMDDQDLKPTRLIASLKLLERFIEEYFDQNPISQLGIIVTKNKRAEKVTEL
GGNPRRHIAAIQKLKERVCQGEPSLQNSLELAIQTLRHMPSHASREVLVLFASLTTCDPG
DILETLRLLKETNVRCSMIGLAAEVRICKKLCTDTNGKYTVILDESHFKDLLNQHTSPPP
AMMNTESSLIRMGFPHHHLGGERSGDKPSMCMCHLDSKSVEGFSTTGYFCPQCKSKYCEL
PVECKACGLTLVSAPHLARSYHHLFPLDQSLEIPVTDFDPGQNIYCYACQIQIQDQTVYQ
CRKCKRIFCIDCDIFVHETLHSCPGCASSRKTQTAEAVFV
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagatgatgacaagggctatcgttgggaaacagaatatgaaaaaacatgggaa
gcgttgcaggaggatgcagaaggttcgttacaacctagcattgacagcatgctgcataaa
gctaagagaagaaaattactggaaaaaatctcaaatgttaggcttggcatgatgagacat
atgtttatcattattgatatgtctgtttctatggatgaccaggaccttaaacctacaaga
cttatagcttctttaaagttactagaacgttttatagaagaatattttgatcagaatcca
atcagtcaactgggtattatagttacaaagaataaaagagctgaaaaggtgacagaactt
ggaggtaatcccagacgacatatagcagctatacagaaattgaaagagagggtgtgtcag
ggtgaaccttcgctacagaattccctagagttggccatacagactctcagacatatgccg
agccatgccagtagagaagttttggtactatttgctagtttaacaacatgtgatcctgga
gatatcctagaaacattacggttgttaaaggagacaaatgtgagatgttccatgataggt
ctggcagcagaggttagaatctgtaaaaagctttgtacagacacaaatggtaaatacact
gttattctagatgaaagtcatttcaaagatttacttaaccagcataccagtccaccacct
gcaatgatgaacacggagtcatcactaatcaggatggggtttccacatcatcacctcggt
ggagagaggtctggcgataaaccctccatgtgcatgtgtcatttagacagtaaatctgtt
gaggggttcagtaccactggatatttctgccctcagtgtaagagtaaatattgtgaacta
ccagtagaatgtaaggcgtgtggtcttacacttgtgtcagcacctcatctagcaagatcc
taccatcatctctttccacttgaccagtcattagaaattccagtcacagattttgatcct
gggcaaaacatatactgctatgcatgtcagattcagatacaggaccaaactgtgtaccag
tgtagaaagtgcaagcgtatattctgtattgactgtgatatatttgtgcacgagactctt
cactcctgcccgggatgtgcaagctctcgtaaaacccagactgcagaagctgtctttgtt
tga
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