Ruditapes philippinarum (Manila clam): 132742392
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Entry
132742392 CDS
T09557
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132742392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132742392
Membrane trafficking [BR:
rphi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132742392
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
Clathrin
WD40_Prp19
zf-RING_Vps41
WDR55
ANAPC4_WD40
zf-RING_5
zf_RING_Vps8_fungal
zf-C3HC4
zf-RING_UBOX
Beta-prop_RIG_2nd
zf-RING_2
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_NWD2_C
EIF3I
Beta-prop_DCAF4
zf-RING_11
Prok-RING_1
WD40
zf-C3HC4_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
132742392
NCBI-ProteinID:
XP_060586764
LinkDB
All DBs
Position
Unknown
AA seq
1410 aa
AA seq
DB search
MILKLFRLQKKCFIILKMASEATAESSKQEINFDIEFDDSEFQSDLPVIDAPPTLESILN
EDEATSILEDDAISIPSSIQMFKDSQSQDTSSLSSQDSSAILEKPNKRDRHRIKKQKAIH
GSVLKPSRLKSIAAQLQSAADKVDAGMPTAMAVSNLIAIGTSHGLVLVFDPKQVLKWCLG
STAVGAQYGAVSSLSFNKDCTRLLSGFARGQITMWDLTNGKLIRTITDAHPPGTAVLHIK
FTDSLVFAVCSDSGGSVFELEFKRLIGMRTCESKCLFSGSRGEVCVIEPLHMSLASKDHP
MQDVSILAMASLSKVLLVTLTPQLKVVFTHPLKGNPSTLPLLAWQFVVIQVSESDRVIDP
VLAFARESTIYFHQVVCTSAQDIRCTGLQKISLSYKLLNITWMNTRTLVTIDTREKMHVI
DVRSEEELEIIDMSEVQLIYNTSFFKSLATGGNVSQALAYAGDHACYQTIVSHGGQLFLL
GTKTVHVFSLRTWRERIDVLVKENRYQDALSLALSFYEGKAKAVVGLQGPSAKKKEVVAD
LMLELLFQFVDLAMTQFCPEKGKIEELEEYYQSIVPVCVDYCLHLNRMDILFGRIYERFS
MDVIAMGTFLECLEPYIINDRLRTMPPVVMKDFVTHYEQKSMLESVEACVVHMDVASLDI
HHVVHLCWSHGLYDAIIYVYNKGMFDYTTPLEELLSTLKAAVDTGKQLSDSQIKLGNKLL
VYISCCLAGRAYPLGDIPEEYVGKVKHDVFESLTCRQSKGSSPDELPYPYLRTLLAFDTR
EFLNVLALAFEEEEFNTTEGIAKRQHTVDILLQIMVESVGFTPTQVGILFTFLARQMARH
ENTITVNKILFEQVLEFLCNPDDESRHEERQQALLELSHAGGLQQVDEERFLYLAERAKF
YRVCELLYEKRRQFDKILSCYLRDYARKYHAFNFIITILDSGRFSAEEKASVQAEALKNL
EELISIDSKQAAQMIVSNLSVSLADVVKQLKTEKPVLFEFLHGVMAFRDTSGSAIHTEKQ
VHVEAGIFELYIDLMCEFKPQQVENFIKTNEGYRLEETLAICRRHHRSEATAYLLEKAGD
IQGAFGIYLENLTGKLKKLTECLLNKSDEGKDSQTQFGEIQTVLLMIVQLCQRNSGKMDE
ASREALWFPLLDALMVPQRRIKDIDNKDILNDFKLLTHHVLNNMMGYIALPAILQKIMQD
PAYNTGKFGEIRELILGMLETYNYEQTLMITCKNLLNHDIHLHLRSLTNAAMKGYIPRDD
QCKICVKKFMNQTDIDPVMVFRCGHSYHCSCLQAVGSVHVIDGEDTYVCYLCSHTKRGQT
QSSRFHRSLSNPQTAQILGIKPEKAKEASEDPQHIQNVDIVRRAMRTPSRLGILTELAKS
ESSSRTSRTTSCIFQQDQFQLNLAAPRIFD
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgattttaaaattatttcgtctacaaaaaaaatgttttattattttaaagatggcttcc
gaagctactgcggaatcatccaaacaggaaataaactttgatattgagtttgatgattca
gagtttcagtccgatctacctgtgatagatgcacctcctacactagagagtattctgaat
gaagatgaggcgacttccattttggaggatgatgctatctccattccatcgtctattcag
atgttcaaggactcacagtcgcaggacacttcatctctgtccagccaggacagctcggct
attttagaaaagccaaacaaaagggacaggcatagaattaagaagcagaaggcaattcac
gggtctgtgttaaagccaagtcgactgaaaagcatcgcagctcagttacagtctgccgca
gataaagtagatgctggaatgcccacagcaatggcagtatccaatctgatagctattgga
acatctcatggtcttgtcttggtctttgatcctaaacaagttttaaaatggtgtttagga
agcactgctgttggagcccagtatggtgctgtttcttctctcagctttaataaggattgt
acccggcttctgagtggcttcgctagaggacagataaccatgtgggatctcaccaatgga
aaactgattcgaacaatcacagatgcccacccacctggtacagctgttcttcatataaag
ttcacagacagtctggtgtttgcagtttgcagtgacagtggcggttctgtatttgaactg
gaattcaaacgattgataggcatgagaacatgcgagtctaaatgtctcttctctggaagc
cgaggagaggtttgcgtcatagaaccacttcacatgagcctggccagtaaagatcaccca
atgcaagatgtctctattttagccatggcctccctgtcaaaggtgctgttagtcacttta
accccacagttgaaggttgttttcacacatccgttaaaaggtaacccatcgacgcttcct
ttgctagcatggcagtttgtagttatacaagtatcggaaagtgacagagttatagaccct
gttctagcatttgctcgagaatcaacaatatattttcaccaggttgtgtgtacaagtgcc
caggatataagatgcacagggcttcaaaagatctccttgtcttataaactacttaatatc
acttggatgaatacaagaactttggttaccatagataccagagagaagatgcatgtgatt
gatgtgaggtcggaggaagagttggagattattgacatgagtgaagttcagttaatatat
aatacaagtttctttaaatctttggccactggaggaaatgtcagtcaagctttggcttat
gctggggaccatgcctgttaccagacaatagttagtcatggtggacaattattcctgctg
ggaaccaaaactgttcatgttttctctctcaggacttggagggagagaattgacgtgttg
gtgaaggaaaatcggtaccaggatgccttgtccctggctctgtcattctatgaaggcaag
gctaaagctgtggtaggactgcagggacccagtgctaagaaaaaagaagtggttgctgat
ttgatgctagagttgttgtttcaattcgtagatttagctatgacccagttttgccctgag
aagggaaaaattgaagagctggaggaatattatcagagcattgtgccagtgtgtgtggat
tattgtttacatttaaacaggatggatatactattcggtcgtatatacgagagattcagt
atggacgttattgctatgggaacgtttcttgaatgcttagagccatatataatcaatgat
aggctgagaacgatgcctcctgtagtaatgaaggattttgtgacacattacgagcagaaa
tccatgttagagagtgtggaagcctgtgttgttcacatggacgtcgccagtcttgatatt
caccatgttgttcacctatgctggagccatggactttatgatgccataatatatgtatat
aataaggggatgtttgattacactacaccactagaggaactactttcaactctaaaagct
gctgtagatactggaaaacagttatcagatagtcagataaagctggggaacaagttgctg
gtatacattagttgttgcctagcggggagagcctatcctttaggtgatatacctgaggaa
tatgtgggtaaagtcaaacatgatgtgtttgaaagtctcacctgtcgacagtcaaagggt
agttccccagatgagctgccatacccatatctccgtacacttcttgccttcgatacgaga
gaatttcttaatgtcttggctctggcatttgaagaagaggagtttaatacgactgaggga
attgcaaagcgtcaacacactgttgatatactgctacagataatggtggaaagtgttggg
ttcactccgactcaggttggaatactgtttacttttctggcaaggcagatggcaagacat
gaaaatacaattactgtcaacaaaattttatttgaacaggttttggagtttttgtgtaat
ccggatgacgagtctaggcacgaggagagacagcaggcgttattagagctatcacatgcc
gggggtctacagcaagtggacgaggaaagatttctatacttggctgagagagctaaattt
taccgcgtctgtgagttgttgtatgagaagaggagacagtttgacaagattttatcctgt
tacttgagagattatgctagaaagtaccatgctttcaatttcatcataacaatactagat
agtgggagattttcagcagaagagaaagccagtgtccaagcagaagccctgaaaaatctg
gaggaattgatttcaatagacagcaagcaagcggcccagatgatagtgtcaaacctgtcc
gtaagtttagctgatgtcgtcaaacaactgaaaacggaaaaacctgttctgtttgaattc
cttcatggtgtaatggcgttcagggacacatctgggagtgcaattcatacagaaaagcaa
gtgcatgtagaggctggtatatttgaactatacatcgaccttatgtgcgagttcaagccc
caacaagtagaaaatttcatcaagacgaatgaaggatacagactcgaggaaactctggcc
atatgcagacgacatcatcggtcagaagccactgcttatctgttagagaaagctggagac
atacaaggggcttttggaatctatcttgagaatttgactggaaaattaaagaaattgaca
gaatgcctactgaataaatcggatgagggaaaagatagtcagacacagtttggagagata
cagacagtattgttaatgatagtacaattatgtcagagaaattcgggaaaaatggacgaa
gcatcaagggaggcattatggttcccactattggatgcactcatggttccacaaagaaga
atcaaagatattgataacaaagatatattgaatgactttaaactgctaactcatcatgta
ctcaacaatatgatgggatatatagcattgccagccatacttcagaagataatgcaggat
ccagcatataatactgggaaatttggcgagattcgagagctcattttaggaatgttggaa
acttacaattatgaacagactttgatgataacatgcaaaaatctactcaatcatgatatt
catctacacttaagaagtctgactaatgccgcgatgaaaggttatattccacgtgatgac
cagtgtaagatatgtgttaagaagttcatgaatcaaacagacatagacccagtcatggtt
ttcaggtgtgggcacagctaccactgttcctgcttgcaggcagttggatcagtccatgtg
atcgacggggaggatacttacgtctgttacctgtgtagccatacgaaacgcggtcagacg
cagagctcgcgctttcatagatccctttccaatccgcagacagcgcaaatactgggtatt
aaaccagaaaaggcaaaagaggcatcagaggatcctcaacacatacagaatgttgacatt
gtaaggagagcaatgaggacgccatctaggcttggaatactgacagaattggctaaatca
gaatcatcttctagaactagtcgtaccacctcgtgcatatttcaacaggaccaatttcaa
ctaaacctggctgctccgagaatattcgactaa
DBGET
integrated database retrieval system
