Ruditapes philippinarum (Manila clam): 132743189
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Entry
132743189 CDS
T09557
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132743189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132743189
03036 Chromosome and associated proteins [BR:
rphi03036
]
132743189
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132743189
Coactivators
SAGA/TFTC/STAGA complex
132743189
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
132743189
STAGA complex
132743189
TFTC complex
132743189
SAGA complex
132743189
SLIK complex
132743189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
TFIID_NTD2
Beta-prop_SCAP
Beta-prop_EML
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_TEP1_C
eIF2A
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD40_like
WD_LRWD1
Tricorn_2nd
Beta-prop_ACSF4
Cytochrom_D1
PEP5_VPS11_N
Nbas_N
Motif
Other DBs
NCBI-GeneID:
132743189
NCBI-ProteinID:
XP_060587701
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MYLELVYNGHEQHAVKFFAKFSLDQEEYYVEDLNKLSTVTKAEHMKGSQLMENFKSSKFV
LKMSRDSYTHLKRYLQEKQLNLLLNIIQEHLFIDVFDGIPRTKQQIDMTSGGLLGEAARE
ANKTKIFYGLLKEPDINIPADDEDEGGGDSEDKPKKKKQKKDPLMMKKARNDPNAPASTR
IPMPELKDYDKMEKINAYREALKRVKIGPNSPPSICFYTFHNAVQGLTSVEISEDSSLMC
TGFGDSNIKIWSLTPNKLRSMKQLESLEIIDKEADDVLERMMDERTSEDTKLLVGHSGPV
YSTSFSPDRSYLTSCSEDGTVRLWSLQTWTNLVSYKGHNAPVWDVKFSPHGHYFVSGGND
RVARLWTTDHYQPIRIFGGHFSDVDSVQFHPNGNYVATGSSDRTVRIFDVLNGSCVRTLT
GHKGAVHSLCFSPDGKYLASSGLDGNICLWDVSNGNMLAQMRDHTSTVYSLSFSRCGAVL
ASGGLDNCVKLWDVTKVIKEMDKDMDASIPSSLSVNESPNLLIGSFATKATPVLSIHFTR
KNLLLAAGPMKVS
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtatttagagctggtatacaatggacatgagcagcatgctgtgaaattttttgcgaaa
ttttcgctggatcaagaggagtattatgttgaagatttgaacaagttatccacagttaca
aaagccgagcatatgaaagggagtcaactcatggagaattttaagtcaagtaaatttgtg
ctgaaaatgtctcgtgactcttacacacatttgaagagatatctgcaagaaaagcaactc
aacctattactcaacattattcaagaacacttgtttattgatgtgtttgatggtatacca
agaacaaagcagcagatagatatgacaagtgggggattgctgggagaagctgcaagagaa
gccaataagacaaagatattttatggattactgaaggaaccagatataaatatacccgct
gatgacgaggatgaaggtggaggcgatagtgaagataaaccaaagaaaaagaagcagaag
aaagacccactgatgatgaagaaagcaagaaatgacccaaatgctcctgcatctaccaga
atacccatgcctgaattgaaggactatgataaaatggaaaagattaatgcatacagagag
gccctaaagagggtgaaaataggacccaattctcccccttctatatgcttctacacattt
cataatgctgtacagggtttaacatccgttgaaatatctgaagactccagtctgatgtgc
acagggtttggcgattcaaacatcaagatctggtcacttacgccaaataaactccgaagt
atgaagcaattagagagtttggaaatcatcgataaggaagcagatgacgtattggagaga
atgatggatgagcgaacatctgaagatacaaaactgttggtaggacacagcgggccggtt
tacagcacgagcttctctcccgatagaagctacctcacatcctgttccgaagatggcaca
gtacggttatggagccttcagacgtggacaaatttagtgtcatacaaaggtcacaacgcg
ccagtttgggatgtgaaattcagtccacatggtcattattttgtatcaggtggaaatgac
agggttgctagactttggacaacagatcactaccagcctatccgaatatttgggggacat
ttttcagatgttgacagtgtgcaatttcatcccaatggtaattatgttgccacagggtcc
agcgacagaactgtaaggatatttgacgtcctgaatgggtcttgtgtaagaacacttact
ggacataagggggcagtgcatagcctttgtttctcaccagatggcaaatacttggcatcg
tcaggcttagatggaaatatttgcttgtgggatgtgtcgaatggcaatatgttggcacag
atgagggaccatacaagtactgtttactcacttagctttagtcgttgtggagctgtcctg
gcttcaggaggattagataactgtgtcaagctgtgggatgttacaaaagtcatcaaagaa
atggataaagacatggacgctagtataccaagttccctctctgttaacgagagtccgaat
cttctgattggctcatttgccacaaaggccacgcctgtattatctatacacttcacgagg
aagaatcttctcctagctgcaggaccaatgaaagtatcatga
DBGET
integrated database retrieval system
