Ruditapes philippinarum (Manila clam): 132743235
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Entry
132743235 CDS
T09557
Name
(RefSeq) cholesterol transporter ABCA5-like isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
132743235
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rphi02000
]
132743235
Transporters [BR:
rphi02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
132743235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_23
SMC_N
AAA_29
ABC2_membrane
AAA_30
AAA_22
AAA_15
RsgA_GTPase
SRP54
GTP_EFTU
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
132743235
NCBI-ProteinID:
XP_060587749
LinkDB
All DBs
Position
Unknown
AA seq
1780 aa
AA seq
DB search
MDRNGTPFSNKVTPDIQSGQQRLTMQSTWFGQFKAMMYKVLLLKRRNKKTTIYEFFLPVY
FIVILAIIRLTSQNDPLDQFGNFPNYSLYDSRFTWTMANKNLIVSPDTAEVQQLMANVKQ
LILDKTNQTIVIQYFANATEVEAEYVRNKTNILAGIVINYNNGSNLTYALRFPDGKLPNT
DIGKTYTGQGGCRRRDGKNGQTNDGGLQNDYSCQVNSYLFAAFSILQSAIDTALIQKETG
VMTFSLPDILVEMLPKSAFLQDTSYIQIVSSIYFVIAYSPLITMLTVALVAEKEKKIKEG
MRMMGLRSSAFWMSYMLVYIFMIIAITGIVTIIAVATKFFENSNVFLFFMLLCLYGLSII
ALAFLFTPFFNKATTAGGLSSLSTMLISTLYLIVSLTRTIDEGTGNVTYSVPVYGRWLLC
LLSPVALALGIDQAIFLDIRGGMTFETASQGEFPLYGPLLMLLLDAILYFALAVYFDNVI
PGEYGPRYKPWFIFTKTFWCPAKRATETAAAYTNQVILQIDNHTDEVTEGAEVEPVPVSM
ESKVAITINNLTKCFEVKKEKKKETVKAVNGLSLTIYQDQITAILGHNGAGKTTLLNILT
GMTGATSGSARVLGLDVSDAQDVETMRRITGICPQHNILFDDFTCLEHLRIFAGIKGIDK
SQVETEINAALDSVGLKDQKNTISKSLSGGQKRKLSVAIAVLGDPKIIILDEPTAGMDPY
SRRHLWAVLKEKKKGRIILLTTHFMDEADILTDRKAIVSKGTLRCCGSSLFLKNRFGLGY
HLNMVVEPDCDTQKVSNLVSGIVSGSEINRVHGKELDITLPYDGVSKFSELFSTLENPST
GKSLGVKNFGVSMTTLEEVFLKLEEEIDIEVDDTGRASNYSDSTKLLPLPYKPGSYGTEA
NNIPEREDNPSDTVTCVEGKTLFMQRFKALCMLRVKKFLKTGPYVFSQLFMPVIFLVVGL
VLSKVLAGNTKSTSQQPPLNISPNLYTKVKAASNQYFPYSTVPRLLIQDDVNSSLSRSMI
GNLATVYDVNEYDNSYYTDTFKLLENDVSPHYIGIQFDTLTQNGQAIDATYKVMYNDSAI
HSIPASIALVSNFLLMGIETITQGAADLSKTIEVNSWPWPKEAGEEKIYNSAAFASVLLI
GMAFSYIPGGMSVDPVKDRELKIRSQLRVTGLPFTLYWLTFFTVDFVKFLIPVVLSVIAV
FVIQVESLMYGGAAFSFILLCLFYIPSNILLAYTFSFLFDKFETCQSVAPTLFIMLGYIP
YIPMAIVDMIADTSSAEIMHYIFSFLIPPYNIFGGLYYIDRIHQRAYYINQEDFIKFNDY
FKWSSNIPICYITSIIHMFVFFFLMRVLDIKKTGGDVKEACLPGKSQSTVIPVSNLDIVE
QEDEDVTAERERVRDLSRRSPNELPVAVAENLRKEFSKDGGEGCCKRNKKAESVKVAVRN
QTFAVEAGEVFGLLGPNGAGKTTTLNMMIADVSPDKGKVIVGGYDIRSSMSNAFQAMGYC
PQHDALWLEMTLKDHLDCYAIIRGIPEHLIPEVTNFFIDNLKLDEHKMKKAKDLSGGTKR
KLSYCMSMLGRPKVVLLDEPSTGMDPQSKRFLWDTISNSFENSNRGAILTTHYMEEADAL
CSRIAIMVNGTMECLGSSQHLKSKYGSGYSLEIKLNADENDDDEILRQKMERLHGYIREL
FPEAVVTEQFSERVQYKIPKSNVETLSRTFTVLEQGKLKYDIAEYSFSQSTLEQVFLEFA
KQQLEEGQSDKEDNVERTKSLMRSMSQESPSHHATSPVRL
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atggatagaaatggaactccattctcaaataaagtgacacctgacatacaatcaggtcaa
caacgtttgacgatgcagtcaacatggtttggtcagttcaaggctatgatgtacaaagtt
cttctcttaaaaagaagaaataagaaaacaacaatatatgagttcttcttaccggtttac
tttatcgtgatactggcaatcattcgattaacttcacaaaatgacccgcttgatcagttt
ggcaactttccaaattattcactatatgatagtagattcacctggacaatggctaacaaa
aaccttatagtatcaccagatactgcagaagttcagcagttgatggcgaacgtgaaacag
ttgattctagacaagacaaatcagacgatagttattcagtatttcgctaatgcaactgag
gtggaggctgaatacgttcgtaacaagacaaatatcctagctggtattgtcatcaattat
aataatggttcaaatttgacctatgctctaagatttcccgatggtaaattaccaaataca
gacattggtaaaacgtatactggacaaggaggttgtcgtcgtagagatggaaaaaacgga
cagactaatgatgggggtcttcaaaatgactatagttgtcaagtcaatagctacctgttt
gcagcattttcaatattacagtcggcaattgatacagcactgatacaaaaagaaaccgga
gttatgacattttctttaccagatatactggtagaaatgttaccgaaatcagctttcctg
caagacacaagctacatacagattgtatcatcaatatatttcgtgatcgcgtattcgccg
ttaataacaatgttaactgtagcattggtggcagagaaggaaaagaagataaaagaaggc
atgagaatgatgggacttagatcttctgcattctggatgagttatatgttggtgtatatt
tttatgatcatagctatcactgggatagtaactatcatcgcagtggcaacaaagtttttt
gagaacagcaatgtatttctattctttatgttgctgtgtttgtacggactgtcaatcatt
gctttggccttcttgtttacaccattctttaataaagctactactgcgggtggattatca
agtttgagtacaatgttgatcagcacattatacctgatagtgagtctaacacggacaata
gacgagggtacgggcaacgtaacatactcggtacctgtgtacggcagatggttactatgt
ctgttatcacctgtagctctagcgctcggtatagatcaggcgatatttctggatatacgt
ggaggtatgacgtttgaaactgccagtcagggagaattcccattgtatggtccactcctt
atgttgttactagatgcaatactttactttgccctggcagtctactttgataatgttata
ccaggagagtatggtccccggtacaagccttggtttatctttacaaagactttctggtgc
ccggctaagagagcaacagagacggcagcagcctatacaaatcaagttatactacaaata
gataaccatactgatgaggtgacagagggggcagaagtggaaccagtccctgtatccatg
gaatcaaaagttgctataactatcaacaacttgacaaaatgttttgaagtgaagaaggag
aaaaagaaggaaacagtgaaagcagtgaacggtttatcgctgacaatatatcaagatcag
ataactgctattctcggacataatggggcaggaaagacaactctgcttaacattctaaca
ggcatgactggtgctacatcagggagcgccagagttcttggactggatgtgtccgacgcc
caggacgtggagacaatgagacgtatcacgggaatttgtccacaacataacatattgttt
gatgacttcacgtgtctcgaacatctccgaatatttgccggcataaaaggcatagataaa
agccaagttgagaccgagatcaacgctgccttggatagtgtaggtctcaaggaccagaaa
aatacaatatcaaagagtttgagtggtggtcagaaacgtaaactgtctgtagctatagct
gtactaggagatcccaagatcataatactggacgagcctacagcaggtatggatccttac
tcccgacgccacctatgggcagtactaaaagagaaaaagaaggggagaataattcttctt
actacacattttatggatgaggctgacatattgacagacaggaaggccattgttagtaag
ggaactctcagatgttgtggatcatctctatttttgaagaaccgatttggactgggatat
catttaaatatggtagtggaaccggactgtgacactcagaaggtcagtaatttagtttca
ggaattgtatccgggtcagaaattaacagagtacacgggaaggaacttgatattactcta
ccatatgatggtgtcagtaaattctcagagttgttttcaacattagaaaatccgtcaaca
gggaagtccctcggggtgaaaaactttggcgtttccatgacaactttagaagaagttttt
ctaaaacttgaggaagaaatagatatagaggtagatgacactggtagagccagcaattat
tctgattcaacaaagttacttcccttaccatacaaacctggtagctatggtaccgaggcc
aataacatacctgaacgtgaagacaatccatcggacacagtcacgtgtgttgaagggaaa
actttattcatgcagaggtttaaagccctgtgtatgttgcgtgtaaagaaattcctcaaa
acaggaccctacgtgtttagtcagctgtttatgccagtcatattcttagtggttggctta
gttctgtcaaaagtgttagccggaaacacgaaatccacatcccagcagccccccctgaac
atctcgcctaatctgtatactaaagtaaaggctgcatctaaccagtactttccatatagt
actgtaccaagattactgatacaagatgatgtcaattctagtctatcacgatcaatgatt
ggaaatctggcaaccgtctatgatgtgaacgaatatgataactcgtactacacagatacg
tttaaacttcttgaaaatgatgtttctccacattacattggcatacagtttgataccctc
actcaaaatggacaggccatagatgctacatacaaggtgatgtataatgactcagcaatt
cattctatcccagcatccattgctctagtcagtaacttcctgttgatgggtatagagaca
ataacacaaggagcagcagatttaagtaaaactatagaagtaaacagttggccgtggccg
aaggaagctggagaagagaagatttataacagtgcagcgttcgcctctgttttactgata
ggaatggcattctcgtatatcccaggtggcatgagtgtagatcctgtcaaagatcgtgaa
ttaaagatacgaagtcagctacgtgtgacaggattaccatttacactttactggctgact
ttcttcacagtggattttgttaaatttctaataccagtagttctgtcagttatagcagtg
tttgttatacaggttgaaagtttaatgtacggtggtgcagcattcagttttatactgttg
tgtctattttatataccatcaaatattctactagcctacactttctcatttctgtttgac
aagtttgagacctgccagagtgttgctcctaccttgtttattatgttgggttatatacca
tacatcccaatggcaatagtagatatgatagcagatacatcttcagccgaaataatgcat
tacattttcagctttcttattccaccatataacatatttggaggtttatactacatagac
aggatacaccagagagcgtattatatcaaccaagaagatttcatcaagtttaatgattat
tttaaatggtccagtaatatccctatctgttatatcacaagtatcattcacatgtttgtt
ttcttcttcctgatgagagttttggatattaagaagacaggtggtgatgtgaaggaggct
tgtttaccaggaaaatctcagtccactgttataccagtcagtaatctggatattgttgaa
caagaagatgaagacgttactgcagaacgtgaacgtgtcagagatctgagcagaagatca
ccaaatgagttaccagttgctgtagcagaaaaccttcgtaaagaatttagtaaagatggt
ggagagggatgttgtaagagaaataagaaggcggagtcagtgaaggttgccgttagaaac
cagacatttgctgtagaagctggggaggtgtttggactgttaggaccaaatggagccggg
aaaacaacaacgttaaatatgatgatagctgatgttagccccgacaaggggaaggttata
gttggtggctatgatataagatcaagtatgtcaaacgcgttccaggccatgggctattgt
ccacaacatgatgcattatggttagaaatgacactgaaggatcaccttgattgttacgct
attattagaggaattcctgaacatcttattccagaagttacaaacttttttattgataat
ttgaagctagatgaacataaaatgaagaaagctaaggatttatctggaggaactaaaaga
aagttgagttattgtatgagtatgttaggtcgaccaaaagttgtgttgttagatgaaccc
tctactggcatggatcctcaatctaagagatttctatgggatactatatctaacagtttt
gagaattctaatcggggagctatattaactacacattatatggaggaagcagatgccctg
tgctctagaattgctatcatggtcaatggaactatggaatgtttagggtctagtcagcat
ttaaaaagtaaatacggaagtggttattccctcgagatcaagttgaatgccgacgaaaat
gatgatgatgaaattttacgacaaaaaatggaacgtttacatggctacatacgagaatta
ttcccagaagctgtggttaccgaacagttcagtgagcgtgttcaatataaaataccgaaa
tctaacgtggagacattgtctagaacctttactgttcttgagcaaggaaagttaaagtat
gatattgcagagtacagttttagtcagtcaactttagaacaggtatttttggagtttgcc
aaacagcagcttgaggaaggacagagtgacaaagaagataatgtagaacgtacaaaatcc
ttgatgagatccatgtcacaagagtccccgtcacatcatgccacatcccctgttagactc
taa
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integrated database retrieval system
