Ruditapes philippinarum (Manila clam): 132743449
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Entry
132743449 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup133-like
KO
K14300
nuclear pore complex protein Nup133
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132743449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132743449
03036 Chromosome and associated proteins [BR:
rphi03036
]
132743449
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
132743449
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132743449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
132743449
NCBI-ProteinID:
XP_060587955
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MFTNRNSSMRAGQSPFNATPQGNRSVQTKRVASVFTPTRKQKSQLNKSVLQASQLLEETS
NFRVEKFGLPLPVLITEALTFADKSTRISVKVDECGWAWLVGGRKLFVWRYKQAQAGRNI
LCKELTLPPSDLAHSAARVCVIPSCGDSQSASCIAVSPEGVIRYWSNVAYEASSMEISAE
LKGEECDCVVNLSPFGCLLATTTSSLVMITTVPGQNSVSCHPLKATQGMFAGIGRRMSSL
IFGGAQGQTIGTTLQAVISGRHEEDERPFYVLSGTYVNKWVIGDYNMEKFLYQIDADRLF
REALAKKVWDKDAVQMTQLTTWMLDMHLTSDGIVLLGAGFDSEMDPVVHYALATIDTDCS
GTPSKLEAFRVLQFTKRYNEENEVDILGYRLLVPEDNQDSVYLYNDYTIIMDNGTGEMSE
ELPAPGGRLLGAGISDSTAVFFSVSQGLISIASNLKQNQSILDEATQELVSRGDVTQLAT
SSTQIEELSMSDDKSARLKAAFLSACSGNLKQAQDIVNDLFPENIVSSGNQTTDIDRLVS
GLSRDLIDDPPASDPRWAENVRPDSGSSTSSLIILQQLKDKQRAHEYIINFLKKLDLWDK
LRTIKVGDQLMSTKLLLCQHAEQLQAACILREMHTSYSDVIDPAIRKVLTTRGEQMGTGL
SPQDLFYREVSHVQDLFEALLEYESDIMAGNFTPSDIINIIASVNSILEGMLHAAIDYRQ
SKSIIYGTGMELTRTPEFMPWTSTSGTSGVRTLIHKQFMLTLDSAIPEVRDLETREQLFQ
HMIALADNILDGYNSQIASICNNEDMVEYTMQVEEQYRQERHNLIGPFLEHKQYERAGSL
AEKYCDFEMLIRICEETGNQERIQRYQQQFADKGFSDFLFSWYMKEGKQGRLLSLPTPQQ
TQLNSFLQKDEFGYLKWLHDIECKDFLSAHNTLLNLGRNEEEYLAKKKTLLSLAKLAALA
HGDADEQLKTNISDIDDEQELILNQELLPTELLQTMNVDADHMKVLTPLELLQLYICDEN
TSATEYDFKKALDLLQFLNQDDPAIDYETIRISIWCKAILRDKAIWTHTATGDPIDSIRD
TIFFKTIELAVTDGCEPSSLLPDFQSMLTCDTLSPVSTDKQLQFLLGAVYEMANNYS
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgtttaccaatagaaatagctccatgagagctggacagtcaccatttaatgctacacca
caggggaacagatcagtacagaccaaacgggttgctagcgttttcacgccaaccagaaaa
caaaagtcacagctgaacaagtcagtgttgcaggcatcacagctactggaagaaacttcc
aattttagagtagaaaaatttggcttgcctttgccagttttgataacagaagctttaacc
tttgctgacaagagtactaggatcagtgtgaaggtagatgaatgtggttgggcgtggctt
gttggaggaagaaaattgtttgtttggagatataaacaagcacaagcaggcaggaatatt
ttatgtaaagagttgacattacctccaagtgatcttgctcacagtgctgcaagggtttgt
gtgatcccgagctgcggtgacagtcagtccgcgtcatgtattgcggtgtcaccagagggc
gttatcagatactggtcaaatgttgcatatgaggcttcatcaatggaaatcagtgcagag
ctgaagggagaggagtgtgactgtgttgtcaatttatctccctttggatgtttactggca
acaacaacaagttctttggtgatgataacaacagtacctggacaaaacagtgtaagctgc
caccctctgaaagctactcaaggaatgtttgcagggataggacgtagaatgtcatcattg
atctttggtggtgcacaaggacagactataggaacaactctacaagctgtgataagtggg
agacatgaagaagatgagcggcctttctatgtactgtcaggaacctatgttaacaaatgg
gtcattggagattataacatggaaaagtttctgtatcagatagatgctgacagactattt
agagaagccttggcaaagaaagtttgggataaagatgctgtacagatgacccagctgaca
acatggatgttagacatgcatctcacaagcgatggcattgttcttctgggagcaggattt
gactcggaaatggatcctgttgtccattatgctttagcaactatagacactgattgtagt
ggaacaccatctaaattagaggcttttagagtactccagtttacaaagagatacaatgag
gagaatgaggttgatatactgggctacagattactggttcctgaagataatcaagatagt
gtgtacctgtataatgattataccatcatcatggacaatggaacaggtgaaatgtctgaa
gaattacctgcccctggtggacgcttacttggtgctggtatatctgatagtacagctgtg
ttcttctctgtcagccaaggactcatcagcattgcctccaatctcaaacagaatcaaagt
attctagatgaagccacgcaagaacttgtatccaggggtgatgtgacccagttggcaaca
agtagcacccagatagaggagttgagcatgagtgacgataaatctgcgaggttaaaagct
gccttcctcagtgcatgcagtggcaacctgaaacaagctcaggatattgtgaatgaccta
ttcccagagaacattgtttcatcagggaaccagaccacagatatagatagactggtttct
ggcctcagtcgtgatctcatagacgacccaccagcctcggacccaagatgggcggaaaat
gttagacctgattctggtagcagcacctcttctctgataattctccaacaattgaaagat
aaacagagagcacatgagtatatcatcaactttctaaagaaactagatctctgggataag
ttgcgaactataaaagtaggagatcaactcatgtctacaaaattgttgctatgtcaacat
gctgaacagcttcaagctgcatgtatcctaagagaaatgcatacatcttatagtgatgta
attgatccagctatacgtaaagtgctaacaactagaggagaacaaatgggtactggatta
tctccccaagatcttttctatagagaggtgtcgcatgtacaggatttatttgaagcgctg
ttagaatatgagagcgatataatggctgggaatttcacaccatctgacatcattaacatt
attgcttcagtcaattctatattagagggaatgttgcatgcagccatagattaccgtcag
agtaaaagcattatctatggaaccggaatggaacttacgcgtacaccggaatttatgccg
tggacatccacgtctggaacatctggggtcagaacacttattcataaacagttcatgttg
acattagactcagccataccagaggttagagatttagaaacacgtgaacagctgtttcag
catatgatagcattagctgacaatattctagatggttacaacagccagattgcctcaata
tgtaacaatgaagatatggtagaatacacaatgcaggttgaggaacaatatagacaagag
agacataatctgattggtcctttcttggaacataaacagtatgagagggctggttccctg
gcagagaaatactgtgactttgagatgttgataagaatatgtgaggagaccgggaaccag
gaaaggatacaaagataccagcaacagtttgctgacaaaggtttctcagatttcctcttc
tcatggtacatgaaagaagggaagcaagggcgacttttatctttaccaacaccccagcaa
acacagctaaatagttttcttcaaaaagatgaatttggctatcttaaatggttacatgac
attgagtgtaaagattttttatcagctcacaatacattattaaatcttggtaggaatgaa
gaagaatatctagctaaaaagaagaccctgttaagtcttgctaagcttgcagcgttggct
catggtgatgcagacgagcagcttaaaactaatataagtgatatagatgatgaacaagaa
ctgatattaaatcaagagttacttcctacagagttattacagacaatgaatgttgatgct
gatcatatgaaagttttaactccattagagttattacagttatacatttgtgacgaaaac
acttcagcaacagaatatgacttcaagaaagcccttgatctcctgcagtttcttaatcaa
gatgatccagccattgattatgaaactattagaataagtatatggtgtaaagctattctt
agagacaaagcaatatggacacacactgcgacaggtgatcctatagacagtataagagat
accatattcttcaagacaatagaacttgctgtaacagatggttgcgaaccttcatctctt
ctaccagatttccaatcaatgctcacatgtgacacactatctccagtatctacagataaa
caattacagttcctactcggtgctgtgtacgagatggcaaataattactcgtaa
DBGET
integrated database retrieval system
