Ruditapes philippinarum (Manila clam): 132744020
Help
Entry
132744020 CDS
T09557
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2-like isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04120
Ubiquitin mediated proteolysis
rphi04137
Mitophagy - animal
rphi04144
Endocytosis
rphi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132744020
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
132744020
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
132744020
04137 Mitophagy - animal
132744020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132744020
04121 Ubiquitin system [BR:
rphi04121
]
132744020
03029 Mitochondrial biogenesis [BR:
rphi03029
]
132744020
Enzymes [BR:
rphi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
132744020
Membrane trafficking [BR:
rphi04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
132744020
Autophagy
Mitophagy
Other mitophagy associated proteins
132744020
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
HECT type E3
132744020
Mitochondrial biogenesis [BR:
rphi03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
132744020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
132744020
NCBI-ProteinID:
XP_060588611
LinkDB
All DBs
Position
Unknown
AA seq
823 aa
AA seq
DB search
MASNGSRRHASTTMKIRLTVFCAKNLCKRDFFRLPDPFAKISVDGSGQCHSTEVCKNTLD
PKWNQHYDLYIGQTDSVTISIWNHKKINKKQGAGFLGCVRIMSNAITQLKDTGFQRLDLQ
RNNADDQEPVRGQIVISLISRDRGNSGIGPAVTNSTQINNSIPNDVHELPDGWEERRTAN
GRVHYVNHITRTTQWEPPTRPAIETSQSSVRITTSTASPTTSNSSNSERRSSSATRLTSS
ASHRHRDRANSSAHRHSTSSLNPPRIHSAHSSVTRNNDLSYNSNSEDNTSSPSEGEFPRR
RSTRRRNYLNRNQLHNAVDLPQGYVRITNRSAGRGNGIVEQRTTQQGQVYFLHTQTGVST
WHDPRVPRDISNLDVLERELGPLPPGWEARHTGNGRVYFVDHNNRTTQFTDPRLTSNIDL
IQSRIKNTSDKENENPVPKYKRDLVHKMKILKQEFTSLQPQGGHCRLEVSREEIFEDSYR
QVMKMRAKDLRKRLMVKFKGEEGLDYGGVAREWFCLLSHEMLNPYYGLFQYARDDIYTLQ
INPDSHVNPEHLSYFHFVGRILGMAIFHGHYLDGGFTMPLYKQLLSKQVTLDDLESVDPD
LHRSLLWMLDNDIEEVLDHTFCVESHSFGQFQQHELKPGGDDIKVTEENKKEYVKLYVQW
VFMRGIEAQFLALQKGFHEIIPQHLLRPFDERELELMIGGLGKIDLDDWKLHTRLKHCTP
DTSIVKWFWKAVDSYDNEMRARLLQFVTGSSRVPLQGFKALQGSTGAAGPRMFTIHQVDT
NTDNLPKAHTCFNRIDIPPYESYEKLYSKLTCAVEETCGFAVE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtaacggttcgagaagacatgcttcaactacgatgaagattagattaacagtt
ttctgtgccaagaatttgtgcaaaagagacttcttccgattaccagatccgtttgccaag
atcagtgtagatgggtccggacaatgtcactctactgaagtctgtaaaaatactctagat
ccgaaatggaatcaacattatgatctttatattggtcagacagattctgtcactataagt
atatggaatcataagaagattaacaagaagcaaggtgctggatttctaggatgtgttcgt
attatgtcaaatgcaatcacacagctcaaagacactggatttcagcgtctggacctgcag
cgtaacaatgcagatgaccaggagcctgtacgtggacagattgtgataagtttgatatct
cgtgaccgtggtaactcagggatcggaccagccgtgactaactcaacacagattaataat
tccattccaaacgatgttcacgaactccctgacgggtgggaggagaggagaacagccaat
ggaagagttcattatgtaaaccacattacccgtacaacacaatgggaacctccaacaagg
ccagctatagaaacgtcccagtcatctgtcagaataacaacgtctacagcatccccaact
acgtccaacagtagtaatagtgagagacgatcatcatcagctacgcgtctaacttctagt
gcttcccacagacatcgtgatcgtgcaaattctagcgcgcacagacacagtacatcatca
ttaaaccctccgcgtattcacagtgcccatagttcagtgactagaaataatgacctcagt
tataatagcaatagtgaggacaatacaagtagtccgtccgagggagagtttccacgacga
cggtctacacgtaggcgcaattatttaaatcggaatcagttacataatgcagtggattta
ccacaaggttatgttcgaatcacaaatcgttcagcaggtcgtggaaatggcattgtggaa
caacgaactacacaacaaggtcaggtatatttcctgcacacacagaccggtgtcagtacc
tggcatgatccccgtgttcccagagatatatcaaatttggatgtgctggaacgagagtta
gggccactgcctccaggatgggaagcaaggcatacaggcaatgggcgtgtatatttcgtt
gaccataataacagaacaactcaatttacagatcctagactcacttctaatattgacttg
atacagagtcgaataaaaaatacgagtgataaggagaatgagaaccccgtgccaaaatac
aagcgagatttggttcataaaatgaagatattaaaacaagagtttactagtttacaacct
cagggcggacattgtagactagaagtttctagagaagaaattttcgaggattcatatcgt
caagttatgaaaatgcgagcaaaagatttacgtaaacgattaatggtaaagtttaaagga
gaagaagggttagattatggtggtgtagcaagggaatggttttgtctactgtctcatgaa
atgttaaatccatactacggtttgttccagtacgcgagagatgatatttacactttacaa
atcaacccagactctcatgttaacccagagcatttgtcgtattttcattttgttggacgt
atactgggcatggcaatatttcacggacactacctggatggaggcttcacaatgcctctg
tataaacagttattatctaaacaagtgaccttagatgaccttgaaagtgttgatccagac
cttcatagaagtttactatggatgttggataatgatatagaggaagtcttagaccacacg
ttctgtgtagaaagtcactcattcggtcagttccaacaacatgaacttaaacctggtggt
gatgacatcaaagttacagaggaaaacaagaaagaatatgtcaagttgtatgtacagtgg
gtatttatgagaggtattgaagcccagttcctcgcgttacagaaaggtttccacgagatc
attccacaacatttactccgaccatttgatgaaagagaattagagttgatgataggtgga
ttagggaagatagatttagacgactggaagttacatacaagattaaaacattgtacacca
gatactagtatagtgaaatggttctggaaggcggtagatagttacgataatgagatgagg
gctagattgttacagtttgtcactggaagttcacgagttccattacaaggatttaaagca
ttacaaggatctacaggtgctgccggaccacgaatgtttaccatccaccaagttgataca
aatactgataacttacccaaggctcatacatgtttcaaccgtatagatatcccaccatac
gagagttatgagaaactttattctaaactgacatgtgctgttgaagagacgtgtggattt
gctgtagaatga
DBGET
integrated database retrieval system
