Ruditapes philippinarum (Manila clam): 132744308
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Entry
132744308 CDS
T09557
Name
(RefSeq) ATP-dependent RNA helicase DDX3Y-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132744308
03041 Spliceosome [BR:
rphi03041
]
132744308
03036 Chromosome and associated proteins [BR:
rphi03036
]
132744308
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132744308
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132744308
mRNA cycle factors
Common to processing body (P body) and stress granule
132744308
Spliceosome [BR:
rphi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132744308
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132744308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132744308
NCBI-ProteinID:
XP_060588962
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MPIDQRQNGPGLEQQFAGLGINSGPPRGGGRGGRNDFGGQGSSYVPPHMRNKGMQDSAPP
QGREFQSRDNRDGGYQGGYNQGGGGGGYRGGYNNFNQGGSGYNDRGGYNRGGYNRGGYNS
GGYDGGYQNRDGGYQSRDGYQNRDGGYQNRDGGFQGRGGYDRGGRGGYNNFGNRGGYNQG
PPRFDQPPPNFNQPPPPMAGGRWDGLMEERHQTRHYQSGQNYDVNSRWDNRADNDRYGNN
ETTKDNWAVPLPPNQKMEDELFGNSNTGINFDKYNDIPVDATGEDCPQHIDEFDDIGFGE
IIRNNIKLTRYQKPTPVQKYSIPIIMGERDLMACAQTGSGKTAAFLVPTLNKLYECGPGD
APVNGVPQGGKVGRRKQFPLALVLAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGS
QMRDLDRGCQMLVATPGRLVDMMERGKIGLDHCRFLILDEADRMLDMGFEPQIRRIVEKD
TMPPTGKRHTMMFSATFPKEIQILARDFLENYIFLAVGRVGSTSENITQKVVWVEEIEKR
SFLLDLLTAAGPDSLTLVFVETKKGADALEDYLISEGYPATSIHGDRSQREREEALKVFR
NGERPILVATAVAARGLDIPHVRHVVNFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK
NKNITRDLMDLLVEAHQEVPSWLESTAYDSRPTGATRGRGRRFTTTFGSRDYRQQNKSNP
QQGFKNYGNQQFNPMGQGFSNYGGSYGGSYGGGGSNAPDWWGN
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgccaattgatcaacgccaaaatggaccgggactagagcagcagtttgctggtctaggc
atcaatagtggtcctccacgaggtggcggacgtggaggtcgaaatgactttggtggacaa
ggaagtagctatgttcccccacatatgagaaataaaggtatgcaagatagtgctccaccc
caggggagggaatttcagtcaagagataatagagatggaggttatcaaggaggatataac
cagggtggtggtggtggtggatatagaggtggatataataatttcaatcaaggtggcagt
ggatacaatgatcggggtggatataatcgtgggggatataaccgtggaggctataatagt
ggcgggtatgatggcggttatcaaaatcgtgatggtggataccagtctcgtgatggctac
cagaaccgtgatgggggatatcagaaccgtgatgggggattccaaggacgtggtggttat
gacagaggtggtcgagggggatacaacaattttggaaataggggtggatacaatcaggga
cctccaagatttgatcaacctcctccaaactttaatcaacctccaccaccaatggcagga
ggaagatgggatggccttatggaagaacgccaccagacaaggcattatcaatcaggacaa
aattatgatgtgaacagtcgatgggataatagggctgacaatgatagatatggtaataat
gagacaactaaagataactgggctgttccccttccaccaaaccaaaaaatggaagatgag
ttgtttggaaacagtaacactgggatcaactttgacaagtacaatgatatacctgtagat
gctactggggaagactgtccccaacatattgatgaatttgatgatattggttttggagag
attattcgaaacaatattaaactcacaagatatcaaaagccaactccagtacagaagtac
tcaataccaattattatgggagaacgagatctaatggcttgtgcccagacaggatctgga
aagacagcagctttccttgtgccaacattgaacaagctgtatgaatgtgggcctggtgat
gcacctgtaaatggtgttcctcaaggaggaaaggttggtcgcaggaaacagtttcctctt
gcactcgttttagcacccacacgtgaattggcatctcagatttatgatgaagctagaaaa
tttgcttacaggtctagagttcggccatgtgttgtttatggtggagcagatattggttct
cagatgcgggatttagatagaggttgccaaatgctggtagcaactcctggacgtcttgtt
gatatgatggagaggggaaagattggacttgatcactgcagatttctgatactggatgaa
gctgatcgtatgttagatatgggatttgagccacagataagacgtattgttgaaaaggac
acaatgccacctacaggaaagagacacaccatgatgtttagcgcaacatttcctaaagaa
attcagattttagcaagagattttctggagaactatattttcttggcagttggtcgtgtt
ggtagtacaagtgagaatatcacacagaaagtagtgtgggtagaggaaattgagaaaaga
tctttcttgctggatcttcttacagctgctggtccagactctcttaccctggtatttgtt
gaaacaaagaaaggggcagatgctcttgaagattacctaatctctgaaggttacccagca
accagtatccatggtgatagaagtcagagagaaagagaagaggctctaaaagtgttcaga
aatggagagagaccaattcttgttgccacagctgttgctgctagaggtctggatatacct
catgttcgacatgtggtgaactttgaccttcctagtgacattgaggaatatgtgcacaga
attggaagaactggtcgtgtaggaaatcttggtttggcaacatcatttttcaatgagaaa
aataagaatataactcgagatttgatggatctactggtagaggctcatcaggaggtacca
tcatggctggagtccactgcctatgactcgcgtccaacaggtgctacaagaggtagagga
agaagattcaccacaacatttggtagccgtgactatcgtcaacagaacaagtctaatcca
caacaaggtttcaagaactatggaaaccagcagtttaatccaatgggtcaaggtttcagt
aactatggtggcagttacggtggatcatatggtggtggaggatctaatgctccagattgg
tggggcaactaa
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