Ruditapes philippinarum (Manila clam): 132744473
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Entry
132744473 CDS
T09557
Name
(RefSeq) pseudouridylate synthase 1 homolog
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132744473
Enzymes [BR:
rphi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
132744473
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
132744473
Prokaryotic type
132744473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
132744473
NCBI-ProteinID:
XP_060589178
LinkDB
All DBs
Position
Unknown
AA seq
537 aa
AA seq
DB search
MLRRIIQRIKQIAKWNMASSVEGKTGEKRTGEDTVSDISKKQKVEPNVARTDRKRKVALL
IAYNGKGYYGLQLNPGFPSIEGDIIKAILEAGLITQDHADTPRKMSFQRAARTDKGVSAA
GNLLSLKMLMNKENLLEEINKHLPPQIRVFEAVRTTNGFNSKDHCCGRTYIYILPTYAFA
PVEEICTLDYRTNADIIERVNEVLLKFQGTHNFHNFTSGIKPFENCAKRYIIEFECGRPF
VRDGVEFCVLSVRGQSFMLHQIRKMIGLTIAILRGHANIDTIEEAYNHEKMDIPRAPALG
LMLEKLHYDHYNRRYASDGSHERIDFNHLREKISAFKEEYIFSEIIKEEIETQSMMNWMA
KLHFHTCGPMENRWSERKKIDNILLSEPTDAKESTENTEDERTNTDRLVQPETQSGSVID
SEADASLVQTKAQSGSNTDSLSGTSLYQTEAQSSSTSDCVLETSQEKTLTNQNESCDDVT
SSKMDCHSGNLTNQRESCDDGATPSQIDCDTENTENKSENDKVSSEESEVKAESMKL
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgttaagaaggataatccagagaattaagcagattgctaagtggaacatggcttcatct
gtagagggtaagacaggagaaaagagaactggagaggatacagtgagtgatatcagcaag
aaacaaaaggtggagccaaatgttgcacgtacagacaggaagcgcaaggtggcgctcctt
atcgcctacaatgggaaaggatattatggacttcaactgaatcctggttttccatcaata
gaaggagatataatcaaagccatattggaggcagggttgataacccaggaccatgcagac
acacccagaaagatgtcatttcagagagctgcacggacagacaaaggagtatcagctgct
gggaacctactgtcattaaagatgttaatgaataaagagaatttattggaagagataaac
aaacatctgccgccacagatcagagtgtttgaggcggtgagaacaacaaatggattcaat
agtaaagaccattgttgtggaaggacatacatatatattctacccacatatgcctttgca
ccggttgaagagatttgcacattagactacaggacaaatgcagacattattgagcgtgtg
aatgaagtgctgttgaagttccagggcactcataactttcacaacttcacatctggaatt
aaaccctttgaaaactgtgccaaaagatatattatagagtttgagtgcggaaggccattt
gtacgagatggggtagaattctgtgtgttgtctgtccgtggccagagttttatgttgcat
caaattagaaaaatgatcggtttgacaattgccatattgagaggccatgctaatattgat
accattgaggaggcttacaatcatgagaagatggacatacctagagctccagccctggga
cttatgttagaaaaactgcactacgaccattataacagaagatacgcgtctgatggctcc
catgaaagaattgactttaatcaccttagagaaaaaatcagcgcattcaaagaagaatac
atattttctgaaataataaaagaggaaatagaaactcaaagtatgatgaattggatggcc
aagctacattttcacacctgtggacctatggaaaatagatggtctgaacgaaaaaagata
gataatatacttttgtcagagccaactgatgctaaggaatcaacagagaatacagaagat
gaaagaacaaacacagatagacttgttcaaccagaaacacagtctggttctgtgatagac
agtgaagcagacgccagtctggttcaaacaaaagcacagtctggttccaacactgatagt
ttatcgggaaccagtctttatcaaacagaagcacagtctagttcaacaagtgactgtgta
ttagaaaccagtcaagaaaaaacattgaccaatcagaatgagtcatgtgatgatgtgacc
tcatcaaagatggactgtcattcaggaaatttaaccaatcagagggagtcatgtgatgac
ggggcaacaccgtctcagattgattgtgatacagaaaatactgagaataagtcagaaaat
gataaagtgtctagtgaagaatctgaagtcaaagcagagtcaatgaaattgtag
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