KEGG   Ruditapes philippinarum (Manila clam): 132744545
Entry
132744545         CDS       T09557                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    132744545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rphi03021]
    132744545
   03019 Messenger RNA biogenesis [BR:rphi03019]
    132744545
Transcription machinery [BR:rphi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     132744545
Messenger RNA biogenesis [BR:rphi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     132744545
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_2 zf-CCHC Torus zf-CCCH_3 zf-CCHC_3 zf-CCCH_RBM22 zf-CCCH_4 zf-C3H1 zf-CCCH_12 tRNA-synt_2b
Other DBs
NCBI-GeneID: 132744545
NCBI-ProteinID: XP_060589277
LinkDB
Position
Unknown
AA seq 302 aa
MQDVVAPVSHITFDIEIALNNQLGSMPLPFPGMDKSGAAICTFFLTSVGCSKATACPFRH
IKGEKTVVCKHWLRGLCKKGDDCEFLHEFDMTKMPECFFFSKYGQCNNKECPFLHIDPEQ
KVKDCPWYDRGFCRHGPNCKNRHVRRLICQNYLCGFCLDGPKCKFMHPSYDLPVQDEKTK
KFHQTVTCHNCGESGHKSYQCPKITANSVPSVVSTSATTIEIKPGATRIGAGIPGSGYHY
GRGAYSHRGQPRLGFTFKPDNEPNQNLDFVTCFKCGLKGHYANRCPKGDLAFLSSSNVQP
AS
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcaggatgtcgttgcaccagtttctcatattacatttgatattgagattgctctcaat
aatcaacttggatcaatgcctttacccttccctggaatggacaaatctggagctgccata
tgtacatttttcttgacctcagtaggatgtagtaaggcaacagcttgtccatttagacac
ataaaaggggagaaaactgtggtctgtaaacattggttgaggggtctctgtaagaaggga
gatgactgtgagttcttgcacgagtttgacatgacaaagatgcctgaatgcttctttttc
agtaaatatggacaatgtaataataaagaatgtccatttctacacattgatcctgaacag
aaagttaaagactgtccctggtatgacagaggattctgtagacatggaccaaattgcaag
aaccgtcatgtgcgaaggctgatatgtcaaaactacctatgtggattctgtttagatgga
ccaaaatgtaaattcatgcatcctagttatgatttgccagtacaagatgaaaaaacaaag
aaattccaccagacagttacatgccacaattgtggggagagtggtcataagtcctaccag
tgtccaaaaattactgccaactctgtacccagtgttgtttcaactagtgcaactacaata
gaaataaagccgggtgcaactcgtattggtgctggtataccaggaagtggatatcactat
ggcagaggggcttactctcacaggggacaacctaggcttggattcacttttaaaccagat
aatgaaccgaaccagaatcttgactttgtcacatgtttcaaatgtggattaaagggccac
tatgcaaatagatgtccaaaaggagatctggcgttccttagttcatcaaatgtgcagcca
gcatcataa

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