Ruditapes philippinarum (Manila clam): 132744733
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Entry
132744733 CDS
T09557
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132744733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132744733
03009 Ribosome biogenesis [BR:
rphi03009
]
132744733
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132744733
Spliceosome [BR:
rphi03041
]
Complex A
U2 snRNP components
U2 related factors
132744733
Complex B
132744733
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
132744733
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
Helicases
132744733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
DEAD
HA2_N
Helicase_C
AAA_19
AAA_22
nSTAND3
ResIII
Flavi_DEAD
SRP54
ABC_tran
AAA_7
T2SSE
TsaE
AAA_30
AAA_25
NACHT
AAA_33
Motif
Other DBs
NCBI-GeneID:
132744733
NCBI-ProteinID:
XP_060589495
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MSKRHRIDVGDSYSRRRDDDRDKKRERSRSPHRTDSKDEKHKSIFEQFNIPKPQLQINPF
TGLPHTPRYLQLLAKRKTLPVWEYKEKFVEVLNKHQTLVLVGETGSGKTTQIPQWCLDWV
RLRYNKKGVACTQPRRVAAMSVAQRVSEEMDVGLGQEVGYSIRFEDCTSSKTILKYMTDG
MLLREAMSDPLLENYGVVIIDEAHERSLATDILMGLLKEVAKQRHDLKIIIMSATLDAGK
FQNYFDNAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEIEGDILLFLTGQ
EEIDEACKRIQREVDNLGPDVGDMKCIPLYSTLPPNLQQRIFEPPPPNKPNGAIGRKVVV
STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTKPG
KCFRLYTEKAFKQEMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRA
LELLNYLAALDDNGDLTELGSMMAEFPLDPQQAKMVIASTDFNCSNEILSITAMLSVPQC
FVRPTELRKAADECKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFINFRSLKSADN
VRQQLARIMDRFNLKRSSTEFTSRDYYLNIRKALVSGFFMQVNIYKKL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggcatcgcatagacgtcggtgactcgtacagcaggagaagagatgatgac
cgagacaagaagagggaaagatcacggtcaccacaccgcactgattccaaagatgaaaaa
cataaatcaatatttgaacagttcaacattcccaaaccacaactacagatcaatccattc
acagggttaccacacacaccacgttacttacagcttcttgctaaaaggaagacattgccg
gtatgggagtacaaagaaaagtttgtagaggtgctaaataaacatcagacgctagtactt
gtcggagagacagggtctggaaaaactacacagattccccaatggtgtctagattgggtg
cggttacgatataacaagaagggcgtggcatgcacacaaccccgtagggtagctgcaatg
tctgttgcacagcgtgtatccgaggaaatggacgtcggtctcggacaggaagttggttac
agcatcagatttgaagactgcacatcatcaaaaaccattctcaaatacatgactgacggt
atgttgctaagagaagctatgtctgatccacttcttgagaactacggtgttgtcataatt
gatgaggctcacgaacgttcactggctacagatattctgatgggtctattgaaggaagtg
gcgaaacagagacacgatctcaaaattatcattatgagtgctacattggacgctggtaaa
tttcagaattattttgacaatgcaccattgatgagtgtacctggaagaacgcatcctgtg
gagattttctacacgccggagcccgagagagattatttagaggcggccattagaacagtg
ctacagatacacatgtgtgaagaaattgagggagatattcttctctttcttacaggacaa
gaggagattgatgaagcttgtaagagaatacaacgtgaagtagacaatctgggaccagat
gtaggagacatgaaatgtatccccttatactccaccttaccaccaaatctacagcaaaga
atcttcgaacctccaccgccaaacaaaccaaatggagccattggtaggaaagttgttgtc
tccactaacattgctgagacctcgctgaccattgatggagtagtgtttgtgattgatccg
ggatttgcaaaacaaaaggtgtacaaccctagaattcgagttgagtcattattggtgact
gccattagtaaggcgagtgcacagcagagggcaggtcgagccgggagaacaaaaccagga
aaatgttttagactttatacagaaaaagcgtttaagcaagagatgcaagaaaacacatat
cccgaaatattgagatcaaatcttggttctgttgtattacagttgaagaaattaggaatt
gacgatcttgtgcattttgatttcatggatcccccagctccggaaaccctgatgagagct
ctggagttgctgaactatttggcagcactcgatgacaatggtgacttgacggaattgggg
tctatgatggccgagttccctcttgatccacagcaggctaagatggtcatagctagtaca
gactttaactgctcgaacgagatcctctctataactgctatgttatcagtcccgcagtgt
tttgtgcgtcctacggagctacggaaggcagctgatgaatgcaagatgagatttgcccac
atagacggtgatcatctgacactgcttaacgtttaccacgccttcaaacagaaccaagaa
gatccgcagtggtgttatgacaactttataaacttccgatcattgaagagtgcggacaat
gtacgtcaacagttggcgaggatcatggaccggttcaacttgaagagaagcagtacagag
ttcaccagtcgcgattactacctgaatatacgtaaagctctggtgtccggtttctttatg
caggtgaatatttacaaaaaattataa
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