Ruditapes philippinarum (Manila clam): 132745409
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Entry
132745409 CDS
T09557
Name
(RefSeq) replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03030
DNA replication
rphi03410
Base excision repair
rphi03420
Nucleotide excision repair
rphi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132745409
03410 Base excision repair
132745409
03420 Nucleotide excision repair
132745409
03430 Mismatch repair
132745409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphi03032
]
132745409
03036 Chromosome and associated proteins [BR:
rphi03036
]
132745409
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132745409
DNA replication proteins [BR:
rphi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
132745409
DNA Replication Termination Factors
ELG1-RFC complex
132745409
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
132745409
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
132745409
Check point factors
HRAD17(Rad24)-RFC complex
132745409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_24
AAA_assoc_2
AAA_16
AAA_30
AAA_22
AAA_11
DNAX_ATPase_lid
DUF815
Mg_chelatase
SLFN-g3_helicase
RuvB_N
SpoIVA_C
ResIII
Kinesin
Gp44_lid
AAA_5
AAA_7
bpMoxR
AAA_19
Viral_helicase1
AAA_18
AAA_28
Motif
Other DBs
NCBI-GeneID:
132745409
NCBI-ProteinID:
XP_060590306
LinkDB
All DBs
Position
Unknown
AA seq
359 aa
AA seq
DB search
MHAFLKTGTLSTASKDKSEAGVSKEAKEKKKHVPWVEKYRPRCVDDVAYQDEVVAVLKKS
LQGSDLPNLLFYGPPGTGKTSTILAASRELFGDIFKTRVLELNASDERGINVVREKVKTF
SQQSASSVRPDGKPCPPFKIVILDEADSMTGAAQAALRRTMEKQSKTTRFCLICNYVSRI
IEPIASRCAKFRFKPLAEEVLVKRLRYICDQEDIACEDEALKGLLDTSEGDLRKAITFLQ
SASRLKAGDTITKTDIYEIAGVIHDDVIDNLLTVCHSNSYEKLQNCVQDIMNEGHSASQL
ILQLHDRVVQLDELEDTPKSVVMEKLAVVDKCLMDGADEFLQLMALCSVLMKQFCSPGK
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcatttttgaagactggtactttgagtacagcctcaaaagataagtctgaggct
ggggtgtcgaaagaagcaaaggagaaaaagaagcatgtaccatgggttgaaaaataccgc
ccaagatgtgttgacgatgttgcatatcaagatgaagttgttgcagtattgaaaaagtca
ctacagggttctgatttacccaatctacttttctatggtccacctggtacaggtaaaacc
tcaacaatattagcagcttccagggaactttttggtgatattttcaagacgagggtttta
gaattgaacgcctcagacgagcgaggtattaatgtagtacgtgagaaagtgaaaacattt
tcacaacagtcggcaagtagtgtccgaccagatggaaagccatgtcctccatttaagata
gtgattcttgatgaggcagactctatgacaggagcagctcaggctgctcttagaagaaca
atggagaagcagtcaaagacaaccagattttgtttgatatgtaactatgttagccgtatt
attgaacccatagcttcccgttgtgcaaagttccggttcaaacctctagcagaagaagtg
cttgtgaaaagattacggtatatatgtgaccaagaagatatagcatgtgaagatgaggct
ctgaaaggattgctggacacatcagagggtgaccttcgtaaagccattacatttctacag
agtgcttcaagattaaaggcaggggacacaattactaaaacagatatttatgaaattgca
ggggtaatacatgatgatgtcattgacaatcttttgacagtgtgccactccaattcctac
gaaaaacttcaaaattgtgttcaagatataatgaacgagggacactcggcatctcagttg
atattacagttacatgacagagtggttcagcttgatgaattagaggacacacctaaatct
gtcgtcatggaaaaacttgctgttgtggacaaatgtttgatggacggtgccgatgaattt
ctccagctgatggcgctctgttctgttctgatgaagcaattttgttcaccaggtaaatga
DBGET
integrated database retrieval system
