Ruditapes philippinarum (Manila clam): 132746410
Help
Entry
132746410 CDS
T09557
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132746410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132746410
03036 Chromosome and associated proteins [BR:
rphi03036
]
132746410
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132746410
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132746410
mRNA degradation factors
5'-3' decay
Decapping complex
132746410
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132746410
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SspO
Motif
Other DBs
NCBI-GeneID:
132746410
NCBI-ProteinID:
XP_060591517
LinkDB
All DBs
Position
Unknown
AA seq
451 aa
AA seq
DB search
MASVKMDNAANHSSPGMNDLKGENNDQGWKTKLKVPPKDTRVKTTDVTNTKGNEFEDFCL
KRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILERVDNTKD
EVQALCVVPTRELALQTSQILIELSKHIGAKVMVTTGGTNLKDDIMRLYEPVHVIVATPG
RILDLMNKNLVKIGKCGILILDEADKLLSQDFKGMLDSIISHLPNDRQILLYSATFPLSV
EQFMRKYLHSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIFCNST
QRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGIDIQAVN
VVINFDFPKHAETYLHRIGRSGRYGHLGIAINLITYDDRFSLHKIESELGTEIKPIPKNI
DKALYVAEFHTEPDMDDDDHPQKTANGAPKG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgtaaagatggataatgctgcgaaccattctagtccaggaatgaatgatctc
aagggagaaaataatgatcaaggttggaagacaaagttaaaagtcccaccaaaggacaca
agagttaaaactacagatgtaactaatacaaaaggaaatgaatttgaggacttttgcctg
aaacgtgacttattgatgggaattttcgagaaaggatgggagtctccctcccctatacaa
gaggctagtataccaattgctctgacaggcagggatattcttgctagagccaagaatgga
acaggaaagactggggcctatgcaataccgattttggagcgggtagataatactaaagac
gaagtgcaagctttatgtgttgtccctaccagagagttggcattacaaactagtcagatt
ctgattgaactttccaaacatatcggggccaaagttatggtgaccactggtggaacaaac
cttaaagatgacattatgagattgtatgagcctgtacatgttatagtagctactccaggc
agaatccttgatttaatgaataaaaacctggtcaagattggtaaatgtggcattcttatt
ttagatgaggctgataaattgttatctcaggattttaaaggcatgttagatagtatcatt
agccatcttccaaatgacagacagatcttgttatactctgctacatttcctctctctgtt
gaacagttcatgagaaaataccttcacagtccatatgagattaacctgatggatgagttg
acattaaaaggtgttacacagtactatgcctttgtgcaggagaaacagaaagttcactgt
ttaaatacccttttctctaagttgcaaattaaccagtccattatattctgcaactctaca
caacgtgttgagcttcttgccaaaaagattacagagttagggtattcatgtttctatatc
catgctagaatgaaccaacaacatagaaatcgtgtgttccatgacttcagacagggactg
tgcagaaatcttgtgtgctctgatttgttcacaagaggtattgacatccaagcagtaaat
gttgtgatcaactttgacttcccgaaacacgcagagacatatctccatagaattggtaga
tcaggcagatatggtcatcttggtattgctatcaaccttattacatatgatgacagattt
tcattacacaagattgagagtgaactgggcactgagattaaaccaatccctaaaaacatt
gacaaagctctctatgttgctgaatttcataccgaaccagacatggacgacgatgatcac
ccacagaaaacagctaatggtgcaccaaagggatag
DBGET
integrated database retrieval system
