Ruditapes philippinarum (Manila clam): 132746562
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Entry
132746562 CDS
T09557
Name
(RefSeq) DNA polymerase delta catalytic subunit-like isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03030
DNA replication
rphi03410
Base excision repair
rphi03420
Nucleotide excision repair
rphi03430
Mismatch repair
rphi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132746562
03410 Base excision repair
132746562
03420 Nucleotide excision repair
132746562
03430 Mismatch repair
132746562
03440 Homologous recombination
132746562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphi03032
]
132746562
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132746562
Enzymes [BR:
rphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
132746562
DNA replication proteins [BR:
rphi03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
132746562
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
132746562
MMR (mismatch excision repair)
DNA polymerase delta complex
132746562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
132746562
NCBI-ProteinID:
XP_060591769
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MATKGFTGKGSMATNKFKPGGPPNKKQKVDDDDEMDFEAELAIMDDMEMEGVESSAPGPD
DELTSAKWARPPVPPIDPKKDALVFQQIDLDHYIGKHMPGMPGCTVGPTPVVRMFGITME
GHSVTAHVHGFTPYFFVPAYPGFSEDDCKKFMDALNTAVMGDLRSNKEEIVRAILGVELV
IKESIYGFHGNRKIPFIKITVALQRLIAPAKRLLEQGFNCPGYGQYGFQSYESNIDFEIR
FMVDSNVVGCNWIEVPAGKYSLRDKENSNQSDAKRPPLKSRCQIELDVSWQDFVSHIPEG
DWSKVAPFRILSFDIECAGRKGVFPEADKDPVIQIANMVIRQGEHAPFIRNVFTLNTCAP
VIGSQVLSYMTEKEMLSKWAAFVREVDPDIITGYNIQNFDLPYLINRANHLKVADFIFLG
RIRDIKSIIRESTIQSKQMGKRENKVINIEGRVQLDLLQILFRDYKLRSYSLNAVSFHFL
QEQKEDVHHSIITDLQHGNDQTRRRLAVYCLKDAILPIRLLDKLMCVINYMEMARVTGVP
LTYLLSRGQQIKVISQLLRKAKEQDLLIPAQKIDPGDEYEGATVIEPVKGYYDLPIATLD
FSSLYPSIMMAHNLCYTSLLNQNTINKEGLTPDQYIKTPCGHYFVKSTIRKGLLPEILEH
LLGARKKAKTDLKNETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTA
FGRMMIEQTKNYVEETYTIENGYKHNAKVIYGDTDSVMCKFGVSTVEEAMKLGQEAADYI
SGKFIQPIKLEFEKVYFPYLLINKKRYAGLYWTNPQKYDKMDCKGLETVRRDNSPLVSNL
INQCLQLLLIDRNPDGAIEHAKQTISDLLCNRIDISNLIITKELTKTEDDYAGKQAHVEL
ANRMRKRDPGSAPQLGDRVPYVIMAAAKKTAAYLKSEDPIYVLENNIPIDTQYYLENQLS
KPLLRIFEPVIGEKKAESVLLKGEHTRTKTVVTSKVGGLMAFAKKKSSCIGCKVPLDNDG
AVCKHCKSKESEIYQKEISTMNALEEKFSRLWTQCQRCSGSLHEDVLCTSRDCPIFYMRK
KVQKDLADQDKLMLRFGDPDW
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaaggttttactggaaaaggttcaatggcgacgaacaaatttaaaccaggg
ggaccaccaaataaaaaacagaaagttgatgatgacgatgagatggattttgaagcagag
ttggcaataatggatgacatggaaatggaaggtgttgaatcatcagctcctggaccagat
gatgaattgacgagcgcgaaatgggctcgccctcctgtaccacccatagatcctaaaaaa
gatgctttggtatttcaacagattgacttagatcactatataggtaaacacatgcctggc
atgcctggttgtacagttggtccgactcctgtggttcgcatgtttggtataactatggaa
ggtcacagtgtcactgcacacgttcatggctttactccatacttctttgtaccggcatat
ccaggatttagtgaagatgactgcaagaaatttatggatgcactgaacactgctgttatg
ggtgatcttaggtccaataaggaagaaatagtgagggccattcttggtgttgaacttgtt
ataaaagagagtatttatggtttccatggcaacagaaagataccatttatcaagataaca
gtggcattacagcgtctgatagctccagccaagagattacttgaacaaggttttaactgc
cctggttacggacaatatggcttccaatcttatgagtctaacattgattttgaaataagg
tttatggtagacagtaatgttgtgggctgtaactggatcgaggtacctgcaggaaagtac
tcccttcgagacaaggaaaactcgaaccaatctgatgccaagcgaccacctctgaaatct
cgatgccagatcgagctcgatgtttcctggcaagactttgtctcacatatacctgaaggt
gattggtcaaaagttgctccattcagaatcctcagctttgatatagaatgtgctggacga
aaaggagtgtttccggaggctgataaagatccggttattcagatagctaacatggttatc
agacaaggtgaacacgccccatttatcagaaacgtgttcacattgaacacatgtgctcca
gtgattggttctcaagtgttgtcatacatgacagagaaagaaatgttatcaaaatgggca
gcatttgtaagagaggtggatccagatataatcacaggctataatatacagaacttcgat
ctgccatatctaataaaccgagcaaatcatctgaaggtggccgactttatattccttggt
agaatacgagacattaagtcgatcattagagagtcaaccatacagagcaaacagatggga
aaaagagaaaataaagtgataaatattgaaggacgtgtgcaattagatttattacagatt
ttgttccgtgactacaagttgagatcttattctctgaacgccgtatcatttcactttcta
caagaacaaaaagaggacgtacatcattccattattacagatttacagcatggaaatgac
cagacaaggcgtcgactggcagtatattgtttgaaggacgccatattgccgataagattg
ctggataaacttatgtgtgtgatcaactatatggagatggcgagggttacaggtgtcccc
cttacatacttattgtctagagggcaacagatcaaggtcatttcacaactgttaagaaaa
gcaaaggagcaagatctattgatacctgcacagaaaatagatcctggggatgaatatgag
ggtgccacagtaattgaacctgttaaaggttattacgatttaccaatagccaccctggat
ttctcctcactatacccatctattatgatggctcacaacctgtgttatacctcactactc
aaccagaacaccattaacaaagaagggttgacccctgatcagtatataaagacaccatgt
ggacattattttgtgaagtccacaataaggaaaggtctactcccagaaattttggagcat
ctactgggtgcaagaaagaaggctaaaacagatctgaagaacgagacagatccattcaag
aagaaagtgttagatggtagacagttagctttgaagatcagtgctaattctgtgtatggt
tttactggtgcacaagtcggtaaactaccctgcttggaaatctcgtcaagtgtgactgca
tttggtagaatgatgattgaacaaactaagaactatgtcgaggagacatatacaatagag
aatggatataaacacaatgcaaaggtaatctatggagacacagattctgtgatgtgtaag
tttggtgtaagtacagtagaggaggcaatgaagttaggacaagaggcggcagattatatc
tcaggaaaattcatccaacctattaaactggaatttgagaaggtatatttcccttacctg
ttgattaacaagaagagatatgccggtctgtactggacaaaccctcagaaatatgacaag
atggattgtaaaggtttggagacagtacgtagagacaacagtcctctagtgtccaacctg
atcaaccagtgtctacaacttcttctcatagacaggaacccagatggagccatagaacat
gctaagcagacaatatctgatctcctatgtaacagaatagatatatcaaatcttattatc
acaaaggaattaacaaagacagaagatgactatgctgggaaacaagctcatgtggaacta
gctaacagaatgagaaaacgagatcctggcagtgctccacaattaggtgacagagtaccc
tatgttatcatggctgctgctaagaaaacagctgcatatctcaagtcagaggatcctata
tatgtattagagaacaatatacctattgatacacagtactacctagaaaaccagctgtct
aaacctttactgagaatatttgaacctgttataggagaaaagaaagctgaatctgtactt
cttaagggtgagcatactagaacaaaaactgtggtaacttcaaaggttggaggtttgatg
gcatttgctaagaaaaaaagttcttgtataggatgcaaagtacctctagataatgatgga
gctgtttgcaaacactgtaagagtaaagaatcagagatttatcagaaggagatttctacg
atgaacgcactagaggagaagttttcccgtctgtggacccaatgtcaaagatgctcgggt
agtctacatgaggatgttctatgtactagtcgagattgtccaatattctacatgaggaag
aaagtacaaaaggatcttgcagatcaagacaagctcatgttaagatttggtgacccagac
tggtag
DBGET
integrated database retrieval system
