Ruditapes philippinarum (Manila clam): 132747609
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Entry
132747609 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: DIS3-like exonuclease 1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132747609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132747609
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
132747609
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
Unstab_antitox
Motif
Other DBs
NCBI-GeneID:
132747609
NCBI-ProteinID:
XP_060593013
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MLEKSNRHLRLKNAHGKSVCVVREVYRRDDIPCLSKLCLTQCNEQYSEGCALLPDNVTHY
VIPDPQVAREYLEIFENPHIQGIIFTQTAVHSIQHDGSRRLYNRLKAVVKDRRKGSVIFH
NEFQTYAYCEREPGEPQAQWHTRATYKAAEWYFNHLAASVPVVMVTENDQFVYDFGHKTP
NLFVVKLKDYLDGFWLEVIPDITALYTSLQEVSSNKTSKDTDFVGYLPLEILTKGIKSGK
YQQGFLQVNKSNASQEAFIKRTKVDLTDDSGLDILIFGMTARNRAVHGDLVVVEILPKSQ
WQSRSNAISEPTKEEKGDGDKVTPVSDKSDTMPTGKVVGVLQRNWREYVACFSQDEETGR
GDKKAGKVLVIPWDYRIPKIRISTRQVDALRDHRIIVRIDNWEVESMYPNGHFVRSLGKI
GDLEAEVAAILVENDLRVPPFSEAQLNELPKDTTQNPWKMLEAEVNDRRDLRKSHLIFSI
DPKGCEDVDDTLSVKRLENGLILELGVHIADVTYFVPPNFLTDXRGSSRSTTVYLADRRY
DMLPGVLSANLCSLVSGVDRHFFLDTKKGMCMLAQAMHDGIIDAEVVRNIPELHDLWGEE
LEVRLQELRESIDMLMAVARGLKARRVKSGALELESVEVQVQLSETKSIENLNPKELRHH
PLPKEEQFSNLRNCASSRNFNIETSSNKQLAESLDRCVDKNDPVVNKLLRSLDYSGCFXX
EXISGRDFGRDQFFPLVWLLDFTPFQHFPIRRYADVIVHRQLLEAVKKERTTSLPTCTQL
EELSQHINKKHRSSQYAQRESQELFQCLYFRGRGTEDENCIVDAVIFQLRANGLFVFVPR
YGIKGPVYLKSKEGQVLYVTDTDEVEWTGGSVTKHDTYFVVDSVLGQQKYHLLDHITVKL
SLNDSWAHASSLRLELLSNKPHKKPLTDMEDVAKQQKASIIQEVSSEAVEKRLQLESYDL
GENFPQLKSQYGQSDDSMYHLFTSLKATALNCDI
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaaaaagtaacaggcatttgcgtttgaaaaatgcccatggcaagagtgtgtgt
gttgtacgtgaggtatacaggagagatgatattccgtgtttgagtaaactctgcttgaca
caatgcaatgaacagtattcagaagggtgtgcattacttccagataatgtaacacattat
gttatacctgatcctcaggttgctagggaatatttggagatatttgagaatccacacata
caaggaattattttcacacaaacagctgttcatagtatacagcatgatggtagtagaagg
ttgtataataggctgaaagctgtagtgaaggacagaaggaaaggctctgtgatatttcac
aatgagtttcaaacctatgcctactgtgagagggagccaggggagccccaggctcagtgg
catactagagccacatataaagctgcagagtggtattttaatcatttggctgcctctgtt
ccagttgtcatggtgacagaaaatgatcagtttgtttatgattttggacacaagacacca
aatttatttgtggtgaaactgaaggattatctcgatggattttggttggaggttatccct
gatataactgccctatacacatcattacaagaggtttcctccaacaaaacaagcaaagac
acagattttgtaggttatctgcctttggagattctaacaaaaggtatcaagtcaggcaaa
tatcagcaaggatttttgcaagtgaacaaaagtaacgcttcacaggaggccttcattaaa
aggactaaggtagatttgacagatgacagtggtttggatattctcatctttggtatgaca
gctagaaacagagcagttcatggagatcttgttgtcgtggaaattttacccaaatctcag
tggcagagtcggtcaaatgccatatctgaacctacaaaagaggagaaaggagatggggat
aaagtgacgccagtgtcagacaaatcagataccatgccaacagggaaagttgttggtgta
ctacagagaaactggagggaatatgtggcctgtttctcccaggatgaggagacaggcagg
ggagataaaaaagctgggaaagttttggttataccatgggattatagaatacccaagatt
aggattagcactcgacaagttgatgccctcagagatcacaggattattgtgcgtatcgac
aactgggaagtagagtctatgtaccctaatggtcattttgtacgaagtttgggcaagatt
ggtgaccttgaggcagaggtcgccgctatactggtggagaatgatttacgtgttccacca
ttctcggaggcacagttgaacgagttaccaaaagacactacacagaacccgtggaagatg
ttggaggcggaggtaaacgatcgtcgagatctacgcaaatctcatctcatctttagtatt
gaccccaaaggttgcgaggatgttgatgacacactgtctgttaagagactggagaatggt
ttaattttagagctaggtgtacatattgctgatgtgacgtattttgtacctccgaatttt
ctgactgatnatcgaggctcaagtcgttcaactacggtataccttgctgatagacgttat
gacatgttacctggggtgttgagtgctaatttgtgttcactggtcagcggagttgataga
catttttttttagatacaaaaaaaggcatgtgtatgctggctcaggcaatgcatgatggg
attatagatgctgaggttgttagaaatatcccagagttacatgatctatggggagaggag
cttgaagtcaggttgcaagaacttcgtgagtctattgatatgttgatggcagtagctcgt
ggtctgaaggcaaggcgggtaaaaagcggtgcacttgaactagaaagtgttgaggttcag
gtgcaactcagtgaaacaaagagcattgaaaacttgaaccctaaagagttgaggcatcat
ccattaccaaaagaagagcagtttagtaatttaaggaattgtgcatcgtctcggaacttc
aatatagaaacatcgtccaataaacagctggcagaatctctggatagatgtgtggataaa
aatgatccagtggttaacaagttactcagatcactggactactcaggatgtttctaatga
gaataaatttctggcagggattttggccgagaccagttttttccattagtctggcttctt
gattttacaccatttcaacatttcccaatcagaagatacgccgatgttatcgttcacagg
cagcttctagaggcagttaagaaggagagaacaacttccttaccaacatgtacacaactg
gaggagttgagtcagcatattaataagaaacataggtcatcacagtatgcccagcgagaa
tctcaggagctgtttcagtgtttgtatttccgaggacgagggacggaagatgagaactgt
atcgtagatgccgttatctttcaactacgagccaatggcttgtttgtctttgttccaaga
tatggtataaaaggtccagtttatttgaagagtaaagagggccaggtgttgtacgtgaca
gacacagacgaggtggaatggacgggcggcagtgtcacaaaacatgacacatactttgta
gtggatagtgtacttggtcaacaaaaatatcatcttttagatcatataactgtaaaacta
agtttaaatgattcctgggcccatgcttcatcactcagactagaactcttgtctaataaa
ccacataaaaagcctctcactgacatggaggatgttgctaagcaacagaaagcatctatc
atacaggaggtttcttcagaagctgttgaaaaacgtttacagctagagtcgtatgacctt
ggtgaaaatttcccgcagctcaaaagtcagtatggccaatcagatgacagcatgtatcac
ctgtttacatcattgaaggcgactgctttaaactgtgacatataa
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