Ruditapes philippinarum (Manila clam): 132747779
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Entry
132747779 CDS
T09557
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132747779
09123 Folding, sorting and degradation
03018 RNA degradation
132747779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132747779
03041 Spliceosome [BR:
rphi03041
]
132747779
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132747779
mRNA degradation factors
5'-3' decay
Lsm complex
132747779
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132747779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
132747779
NCBI-ProteinID:
XP_060593261
LinkDB
All DBs
Position
Unknown
AA seq
133 aa
AA seq
DB search
MNELFCLIQLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECYIRGSTI
KYLRIPDEVIDMVKEEVIQKSKGRGEMKGRGGGQRGRGGRGAFGRGGGRGGGGGRGGGGG
GGGGNRPGKGRGE
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattgttttgtttaattcagttggtggagttgaagaatggagaaacatacaac
ggacatttagtaagctgtgataactggatgaatatcaatcttagagaagttatttgtact
tcaagggatggagacagattttggaggatgccagaatgttatatcagaggaagcactata
aaatacttaagaattcctgatgaagttatagacatggtcaaagaagaggtcatccaaaaa
tcaaagggtcgtggtgagatgaaaggtcgtggtggtggtcagagaggtcgtggaggcaga
ggagcatttggtcgaggaggtggtcgaggtggtggcggaggccgtggaggaggaggagga
ggtgggggaggtaacagacctggtaaaggaagaggagaataa
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integrated database retrieval system
