KEGG   Ruditapes philippinarum (Manila clam): 132748049
Entry
132748049         CDS       T09557                                 
Name
(RefSeq) WD repeat-containing protein 43-like
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    132748049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rphi03009]
    132748049
Ribosome biogenesis [BR:rphi03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    132748049
SSDB
Motif
Pfam: Utp12 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40 WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_EML Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_C Beta-prop_SPT8 ANAPC4_WD40 VPS11_N Beta-prop_WDR75_1st PEP5_VPS11_N Beta-prop_DCAF4 CPSF_A
Other DBs
NCBI-GeneID: 132748049
NCBI-ProteinID: XP_060593577
LinkDB
Position
Unknown
AA seq 618 aa
MDTTPIEFSPKGEFAVHSSHDGVIKVWEIATNSLKNEYKPSSHLSATCTCLSWCPRSREN
KQKKKRQRVSKTHLTSAIQELELVAIGTASGSILLYSVIKGDLHSQLVEGHSDRVNNVVW
YPESDALYSCSSDQHIIEWEITSLKIKHKWKGDKGPVYSLCKCSNEHLLSAGRSIKLWDL
KTKQELKRFTGHATEVFKLLHVPTSPDSLENSYFLSAAANDRLVNAWQINTSSTDKNALA
AFSMPDEPVDMMISSHSKPLVLVVVTECGKALLYEHKLNGKLKQPLKPKVTIQIASEVNK
TSIPKPIQILAAYVCDESKHKLLLVHGNNLKPTFEKVTCSMSEPDMCLIREDSMSVRARK
ESNVTKVKTPEVSKDLTVLVPGQMTPIPPTQEQTGNRRKRKASVGEMTLEQRLNAVSLEK
PKSRDGKHPPRADTLVTLLVQGLQSQDRKLLNQVLQKTDVKLIQNTVRKLPVQMVIPLVQ
ELTKRMHGHAQSGISQVVWIQTVLAVHTSYLMTFPEIVETFSGLYQMMDSRVTMLGKLSR
LKGKLDIMLSQISAQTQAQGEEPGASQPALLQFEEDSSDEDLEDIAIGPPVSDSEENWED
FSDEESDMDMQDEINGKG
NT seq 1857 nt   +upstreamnt  +downstreamnt
atggacaccacaccgattgagttctccccaaaaggcgaatttgctgtgcattcaagtcat
gacggtgttataaaagtttgggaaatagcaactaacagtttgaagaatgaatataaacct
agttcacatctttccgctacttgcacgtgcctgtcatggtgtccaagatcaagagagaac
aagcaaaagaagaaaaggcagagagtttcaaaaactcatctcactagtgctatacaggaa
cttgagttggttgctataggaacagcctctggttctattctgttatatagtgtgataaaa
ggagatctacatagtcaattggtagagggtcattctgacagagtaaacaatgttgtttgg
tacccagaatctgatgctttatatagttgttccagtgatcaacatataatagaatgggaa
atcacatctttaaaaattaaacacaaatggaaaggtgataaaggaccagtgtatagttta
tgtaaatgttctaatgaacatctattgtctgctggtagatctatcaaattgtgggatctt
aaaactaaacaagaattaaaaaggtttactggtcatgctacagaagtgttcaagttatta
catgttcctacaagtccagattcattagaaaattcttactttctatctgctgcagcaaat
gatagattagtgaatgcatggcagattaacacatcatctactgataaaaatgcattggca
gctttttcaatgcctgatgaacctgtagacatgatgatctcctcacattctaagcctctt
gttctggtagtagttactgaatgtggaaaagccttactgtatgagcataagttaaatggg
aagttgaagcagcctttaaagccgaaagtgaccatacagatagctagtgaagtgaataaa
acatctataccaaaacctatacaaatacttgcagcatatgtgtgtgatgaatccaaacat
aaacttttactggtgcatggaaataatttaaaacctacgtttgaaaaagttacttgttct
atgtcagaaccagatatgtgtttaatacgagaagattcaatgtcagtcagagctaggaag
gagtccaatgtaactaaggttaagacacctgaggtatctaaggatctgactgtattagtg
ccaggacagatgacccctatccctcctacacaagaacagactggaaacagacggaagagg
aaagcatctgtgggagagatgacattagaacagagattgaatgctgttagtttagagaaa
ccgaagtctagagatggtaaacatccacctagagcagataccctagtcactttgctagtg
cagggacttcaaagtcaagacagaaaacttttaaatcaagttttacagaaaactgatgtc
aagttaatacagaatactgtacgtaaattaccggtacagatggtgatacctcttgtacag
gaactcactaaacgaatgcatggacatgctcagtcgggtatatcacaggttgtatggata
caaacagtgttagctgtacatacttcatatctaatgacatttccagaaattgtggagaca
tttagtggactgtatcagatgatggactctcgtgtcactatgctgggaaaattgtcaaga
ttaaagggaaaactagatataatgctatcacagataagtgctcaaacacaagcccagggt
gaggaaccaggagcttcccaacctgccctcctacagtttgaagaagattcatcagatgaa
gatttagaggatattgctataggaccaccagtttctgactcggaggagaactgggaggat
ttttctgacgaggagtcggacatggacatgcaggatgaaataaatggcaagggatga

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