KEGG   Ruditapes philippinarum (Manila clam): 132748067
Entry
132748067         CDS       T09557                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132748067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rphi03041]
    132748067
Spliceosome [BR:rphi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    132748067
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd PRP4 ANAPC4_WD40 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_DCAF4 Beta-prop_EML Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SCAP WD_LRWD1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_like WD40_RFWD3 Beta-prop_WDR11_1st IBB
Other DBs
NCBI-GeneID: 132748067
NCBI-ProteinID: XP_060593594
LinkDB
Position
Unknown
AA seq 518 aa
MDSDEESETQFIAKRQKILQYGSLEQKEKQRLAGGGGMEGSLASEAIKIGIASGNINISK
GATLDLEKEYEQSQAELLADFEKRKKAKKIQVSTDDSEVKAHLRQLGEPICLFGEGPADR
RERLRQVIAARGEDTLRKQKVEEEINKKKREEENITWYHEGNESLKDARLWIAEYSIPRA
KARIHKEKQESHFAAQKSVFSQDIQKRMRSVTNECSQIGDTRPLSHCQFSPNGKMIATAS
WSGLCKLWSVPDCQEIRTLRGHNCNVGAIVFHPRATIDLDNTACCMASCSQDGAVKLWNL
VGDEPVADIEGHAPYRVSRLAYHPSGRFLATCCFDNSWRLWDLEAQDEILHQEGHSKPVY
DICFQCDGALAATGGLDAYGRVWDLRTGRCIMFLEGHLKSVLAVDFGPDGYHIATGSEDN
TAKIWDIRQRKCVYTIPAHKNLISKIKFQPNHGRYLVTASYDSTAKVWAHPVGAPIKNLA
GHEGKVMGVDISPDLQYIATVSFDRTFKLWASEVKGGL
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggattcagatgaagagagtgaaacccaattcattgccaagagacaaaagatattacaa
tatggcagcttggaacagaaagaaaaacaacgattggctggaggtggtggtatggaaggg
tctcttgcaagcgaagccattaaaattggaatagcttctggcaacattaatatctcaaaa
ggagctactttggaccttgaaaaagagtatgaacaaagtcaagctgaacttctagcagat
tttgaaaaaagaaaaaaggcaaaaaagattcaagtctctacagatgactctgaagtgaaa
gcacatctaagacagcttggtgaaccaatttgtttatttggggagggtcctgctgaccga
cgagagcgactgcggcaagttatagctgcaagaggtgaagacactcttagaaaacaaaaa
gtcgaggaggaaatcaacaaaaagaaaagagaagaggaaaacataacctggtatcatgaa
ggaaatgaatcattgaaggatgcaagactgtggatagctgaatattctataccaagagct
aaggcaaggatacacaaagagaagcaagaatcccattttgctgctcagaaatctgttttc
tctcaggatatacaaaaaagaatgaggtctgtgacaaatgaatgtagtcaaataggagat
acccggcccctgtctcattgtcagtttagtccaaatggtaaaatgatagcaacagcttca
tggtcagggttatgtaagctgtggtcagtgccagactgtcaagagattagaactcttaga
ggtcacaactgtaatgtaggtgccatagtgtttcatccgcgagctacaatagatcttgat
aacacagcctgttgtatggcgtcatgtagtcaagatggggctgtcaaactttggaacctt
gttggagatgagccagtagcagatatagaaggtcatgcaccttacagggtgtcaagatta
gcttatcatccttctggtagatttctagctacatgctgttttgataactcatggcggttg
tgggatttggaggcccaggatgagatattgcatcaagaaggacacagtaaaccagtgtat
gatatatgcttccagtgtgacggtgctttagctgcaacaggaggtttagatgcatatggg
agagtttgggatcttcgcactggaagatgtataatgttcttagaaggtcatcttaaatca
gtgttagctgtggattttggaccagatgggtatcatatagccactggtagtgaggataat
acggccaaaatctgggatattcggcagaggaaatgtgtatatacaataccagcccataaa
aatctcatcagtaaaattaaatttcaaccaaatcatggaagatatcttgtaacagcatct
tatgattctacagccaaggtatgggcacacccagttggtgcacctatcaagaatttagct
ggtcacgaaggaaaagtaatgggagttgacatatcgcctgacctccagtatattgcaaca
gtatcatttgatagaacattcaaattgtgggcctcagaggttaaaggtggattatga

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