Ruditapes philippinarum (Manila clam): 132748067
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Entry
132748067 CDS
T09557
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132748067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132748067
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
132748067
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
PRP4
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SCAP
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Ge1_WD40
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR11_1st
IBB
Motif
Other DBs
NCBI-GeneID:
132748067
NCBI-ProteinID:
XP_060593594
LinkDB
All DBs
Position
Unknown
AA seq
518 aa
AA seq
DB search
MDSDEESETQFIAKRQKILQYGSLEQKEKQRLAGGGGMEGSLASEAIKIGIASGNINISK
GATLDLEKEYEQSQAELLADFEKRKKAKKIQVSTDDSEVKAHLRQLGEPICLFGEGPADR
RERLRQVIAARGEDTLRKQKVEEEINKKKREEENITWYHEGNESLKDARLWIAEYSIPRA
KARIHKEKQESHFAAQKSVFSQDIQKRMRSVTNECSQIGDTRPLSHCQFSPNGKMIATAS
WSGLCKLWSVPDCQEIRTLRGHNCNVGAIVFHPRATIDLDNTACCMASCSQDGAVKLWNL
VGDEPVADIEGHAPYRVSRLAYHPSGRFLATCCFDNSWRLWDLEAQDEILHQEGHSKPVY
DICFQCDGALAATGGLDAYGRVWDLRTGRCIMFLEGHLKSVLAVDFGPDGYHIATGSEDN
TAKIWDIRQRKCVYTIPAHKNLISKIKFQPNHGRYLVTASYDSTAKVWAHPVGAPIKNLA
GHEGKVMGVDISPDLQYIATVSFDRTFKLWASEVKGGL
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggattcagatgaagagagtgaaacccaattcattgccaagagacaaaagatattacaa
tatggcagcttggaacagaaagaaaaacaacgattggctggaggtggtggtatggaaggg
tctcttgcaagcgaagccattaaaattggaatagcttctggcaacattaatatctcaaaa
ggagctactttggaccttgaaaaagagtatgaacaaagtcaagctgaacttctagcagat
tttgaaaaaagaaaaaaggcaaaaaagattcaagtctctacagatgactctgaagtgaaa
gcacatctaagacagcttggtgaaccaatttgtttatttggggagggtcctgctgaccga
cgagagcgactgcggcaagttatagctgcaagaggtgaagacactcttagaaaacaaaaa
gtcgaggaggaaatcaacaaaaagaaaagagaagaggaaaacataacctggtatcatgaa
ggaaatgaatcattgaaggatgcaagactgtggatagctgaatattctataccaagagct
aaggcaaggatacacaaagagaagcaagaatcccattttgctgctcagaaatctgttttc
tctcaggatatacaaaaaagaatgaggtctgtgacaaatgaatgtagtcaaataggagat
acccggcccctgtctcattgtcagtttagtccaaatggtaaaatgatagcaacagcttca
tggtcagggttatgtaagctgtggtcagtgccagactgtcaagagattagaactcttaga
ggtcacaactgtaatgtaggtgccatagtgtttcatccgcgagctacaatagatcttgat
aacacagcctgttgtatggcgtcatgtagtcaagatggggctgtcaaactttggaacctt
gttggagatgagccagtagcagatatagaaggtcatgcaccttacagggtgtcaagatta
gcttatcatccttctggtagatttctagctacatgctgttttgataactcatggcggttg
tgggatttggaggcccaggatgagatattgcatcaagaaggacacagtaaaccagtgtat
gatatatgcttccagtgtgacggtgctttagctgcaacaggaggtttagatgcatatggg
agagtttgggatcttcgcactggaagatgtataatgttcttagaaggtcatcttaaatca
gtgttagctgtggattttggaccagatgggtatcatatagccactggtagtgaggataat
acggccaaaatctgggatattcggcagaggaaatgtgtatatacaataccagcccataaa
aatctcatcagtaaaattaaatttcaaccaaatcatggaagatatcttgtaacagcatct
tatgattctacagccaaggtatgggcacacccagttggtgcacctatcaagaatttagct
ggtcacgaaggaaaagtaatgggagttgacatatcgcctgacctccagtatattgcaaca
gtatcatttgatagaacattcaaattgtgggcctcagaggttaaaggtggattatga
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integrated database retrieval system
