Ruditapes philippinarum (Manila clam): 132748760
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Entry
132748760 CDS
T09557
Name
(RefSeq) TATA box-binding protein-like 1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132748760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132748760
03021 Transcription machinery [BR:
rphi03021
]
132748760
Transcription factors [BR:
rphi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
132748760
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132748760
RNA polymerase III system
TFIIIB
132748760
RNA polymerase I system
SL1/TIF-1B
132748760
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3874
Motif
Other DBs
NCBI-GeneID:
132748760
NCBI-ProteinID:
XP_060594380
LinkDB
All DBs
Position
Unknown
AA seq
265 aa
AA seq
DB search
MADGQVIAGGVSQLPGTNGGVIAPEGYDPNPQPEEEDVPMLDININNVVCSFNTKCHLNL
KRIAMEGTNVEYHRQHGMLNMRLRNPYTTASVWSSGKITCTGALSEEFSKIAARKFARKI
QKMGYKVKFTNFRIVNVLGTCSLPFALDITKFSMEHKEASYEPELHPGVTYRIKSPKATL
KIFSTGSITVTAPRVANVQSAIEYIYPLVADFNAGPRSVKTSSSVNNVMNKRLQAERKVV
DDESDFDGSSMEDSDGDFDSDVSHD
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtcaagtcatagctggtggagtaagccagcttcctggtacaaatggtgga
gttattgcccctgaaggttatgatcctaaccctcaaccagaggaagaggacgttccaatg
ttagatattaatataaacaatgttgtatgcagctttaataccaagtgtcatctgaatttg
aaaagaattgccatggagggtacaaatgtagaatatcacagacaacatgggatgttaaat
atgagattaagaaatccttacactacagccagtgtgtggtcttctggtaagatcacatgc
acaggggccctgagtgaagagttttccaaaatagctgcaaggaagtttgcaagaaaaata
cagaaaatgggatataaagtaaagttcaccaatttccgtatagtgaacgtccttggaaca
tgttcactgccatttgcccttgatattactaaattttccatggaacacaaggaagccagt
tatgaacctgagctgcatccaggtgttacttacagaataaaaagtcccaaggctacactg
aaaatattctccaccggcagtataactgtcacagccccacgggtagcaaatgtacagtca
gcaatagaatatatatatccattagtggcagactttaatgctggacctagatctgtaaaa
acttcttctagtgtgaacaatgtgatgaacaaaagactacaggctgagcgcaaagtcgtc
gatgatgaatcggattttgacggaagtagtatggaagacagtgacggagattttgacagt
gatgttagtcatgattaa
DBGET
integrated database retrieval system