Ruditapes philippinarum (Manila clam): 132748959
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Entry
132748959 CDS
T09557
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132748959
04121 Ubiquitin system [BR:
rphi04121
]
132748959
Transcription factors [BR:
rphi03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
132748959
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
132748959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-BED
zf-C2H2_12
DUF659
hAT-like_RNase-H
DBD_Tnp_Hermes
Motif
Other DBs
NCBI-GeneID:
132748959
NCBI-ProteinID:
XP_060594605
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search
MDEFTTVKNPKGKSDIWRHFGLQKSKITQKLIDNTAVCMKCDMVIKCSGGGTSNLSAHIR
RHHPSLLSSAKSLNSSSKTTTADVHVDQKQSETVSLPTIPKLFASKYASSSDRSKLITNK
IARFLVKDLRPYSMVESPEFKDLISCLDPRYTVPGRKVFSERIIPEMYESAKENVKLNLK
NAEQVSLTTDGWTSCATESYMTVTSSHITDSWELKNFVLQTRALPESHTAVHVTAVLNAA
VEERALPTGHGKPTLVTDNASNMVKAGELFGSLHLGCYAHTLNIAVQKCLSVKRASHLLA
KIRRIVAFFHRSNIANNILQVKAEALGLPQHKLIIDVSTRWNSAYDMVSRFLEMQVAVFA
TLRSKDVGKVSDVSISDEELLLAEEMIKFQKPLKDITVMLCSENNPTVSVIMPLQHQIVN
SILTGTDTECPAVTEMKSLVKKSLEPRYKGSEQVLNMCSALDPRFKMLPFLSDEDKAGVF
NRLTSETVTVNEVSKVKVEPDENLLTEIDEPELPSLP
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggacgaattcaccacggtcaaaaatccaaaggggaaatcggatatttggaggcatttt
gggctccaaaagtctaaaataacacagaaattaattgataatacagccgtatgtatgaag
tgtgatatggtcataaaatgttcaggaggtgggacgtccaatttatcagctcacattcgc
cgacatcatccgtcattattgtcgtctgctaaatcattaaattcaagttcaaaaactacc
accgctgatgttcatgtggaccagaaacaaagtgagactgtttctttacctacaatacca
aagctatttgcgtcaaagtatgccagtagttcagatcgatctaaactaataacaaataaa
attgcaagatttttggtgaaagatctccgtccatacagtatggtagaaagtcccgagttt
aaagacttgatcagttgccttgacccaagatatactgtcccaggcaggaaggtgttttca
gaaagaatcatacccgagatgtatgaatctgccaaggaaaatgtgaaacttaatctgaag
aatgcagaacaggtttcactgacgactgatggatggacgtcctgtgctactgaatcatat
atgacagttacatcaagccatatcactgatagttgggagttgaagaactttgtgttgcag
accagggcactcccagagagtcatacagcagtgcatgttacagcagtattaaatgcagca
gttgaggaacgggctctaccaacagggcatggtaagccgactctagttaccgataatgca
agtaacatggtgaaagctggagagttgtttggttcacttcaccttggatgttatgctcac
acattgaacatagctgtgcagaaatgcttatcagtaaagagagctagtcacctgcttgcc
aagatccgtcgaatagtggctttttttcacagaagcaacattgcaaataatatccttcaa
gtaaaggctgaggctctaggtcttccgcagcataaattgatcattgatgttagcacaagg
tggaacagtgcatatgatatggtgtctagatttctcgaaatgcaggtggctgtgtttgcg
acccttaggtcaaaagatgttggcaaagtgagtgatgtctccatttctgatgaagaactg
cttctagcagaggagatgatcaagtttcaaaagcccttaaaggatatcacagtgatgctc
tgctcagaaaacaacccaacagtctctgtaataatgcccttacaacatcagattgtaaac
tccattttgacaggcacagatactgaatgcccggcagtgacagagatgaagtccttggtt
aagaaaagtcttgaacctcgatacaaaggaagtgagcaagttctcaatatgtgctcagca
cttgacccaagattcaaaatgcttccttttttgtcagatgaagacaaggctggggttttc
aatagacttacatcagaaacagttacagtaaatgaagtgagtaaggttaaagttgagcca
gatgagaacctcctaactgaaattgatgagccagaattaccaagtttgccttaa
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