Ruditapes philippinarum (Manila clam): 132749316
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Entry
132749316 CDS
T09557
Name
(RefSeq) vacuolar protein sorting-associated protein 35-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
132749316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132749316
Membrane trafficking [BR:
rphi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
132749316
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps35
FerA
DUF3896
Vps39_1
Motif
Other DBs
NCBI-GeneID:
132749316
NCBI-ProteinID:
XP_060595023
LinkDB
All DBs
Position
Unknown
AA seq
798 aa
AA seq
DB search
MPSTPQLSPQEEQEKLLEEALSIVKNQSFQMKRCLDKGKLMDGLKHASTMLGELRTSMLS
PKSYYELYMSISDELRHLELYLVDEFQKGRKVSDLYELVQYAGNIVPRLYLLITVGVVYI
KTNELSRRDILKDLVEMCRGVQHPLRGLFLRNYLLQCTKNVLPDVEVEANLGEYEAGTIS
DSIDFILLNFSEMNKLWVRMQHQGHTRNKEKRERERQELRILVGTNLVRLSQLECIDMSR
YKKGVLPGVLEQVVSCRDPIAQEYLMECIIQVFPDDFHLQTLSPFLRACAELHASVNVKN
IIISLIDRLAQFAQNEEGAGIPPEIQLFDIFSQQIAQVIQNRSDMPPEDIVSLQVALINL
ALKCYPDKIEYVDKVLETTEDIFNRLNLDHLEHGSSVSKELMRLMKIPVDNYNNILTVLE
LQHFGPLFEYFDYQSRKVMSCYLITNALENETEIPSQEQVDSLLSIVSVLVQDQNDQPEE
GDDPEDFAEEQGLMGRFIHLLQSEDANQQYLILNTARKHFGAGGDKRIKFTLPPIVFSAY
RLANRYKDHSDEDENWEKKCQKIFQFCHQTIGALIKAEQAEIPLRLFLQGAMAAGGIGFE
NHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTLEQMSCFGEENHEPLRTQCALAA
SKLLKKPDQCRGVATCSHLFWSGKSTVEDGETRDGKRTSDCLKKGVKIANQCMDSSVQVQ
LFVELLNHYIYYYEKGNDQVTIQVLNQLIAKIKETLPNLEANEETEQINKHFQNTVEHLQ
AMKQAADSEGPDYSDLTV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctacaccacagctgtctccccaggaggaacaagagaagcttctagaggaggct
ctcagcattgtgaaaaatcagtcatttcaaatgaaaagatgccttgacaaaggcaagtta
atggatggtttgaagcatgcatcaacgatgcttggagaattgagaacttcaatgttatct
cctaaaagttattatgaactatatatgtccatatcagatgaactgcgacacttggagcta
tatcttgtggatgaattccagaaaggaagaaaagtgtcagatctgtatgaactcgtccaa
tatgctggaaatattgttcccaggctatatttgctgataacagttggtgttgtttacatc
aagacaaatgagttgtcaagaagagacatcctgaaagatttggtagagatgtgtagagga
gtacaacatccactgaggggactctttctcagaaactaccttttacaatgtaccaaaaat
gtcctacctgatgtagaagttgaagcaaatttaggagaatatgaggctggtacgatctcc
gactccattgattttatactgttgaatttctcggagatgaacaaactctgggtgcgcatg
cagcatcaggggcatacacgtaacaaggagaaacgtgagagggagcgacaagaattacgt
attctagttggaacaaatcttgtcaggctcagtcagcttgagtgcattgatatgagcaga
tataaaaagggagtactaccaggtgtgttagaacaggttgttagctgtagagatcctata
gcccaagagtatctgatggaatgtatcatacaggtgtttccagatgactttcacctacag
accctcagtccgttcctgagagcttgtgctgaattacatgccagtgttaatgtgaaaaat
atcatcatctctctaattgacagacttgcccagtttgcccagaacgaggagggagcagga
ataccaccagaaatacagttgtttgatattttctcacagcaaattgcacaagttatacag
aatcgttcagacatgccaccagaagatatagtatcattacaagttgccctgatcaacctg
gctctcaaatgttaccctgataagatagaatatgtggataaagtattggagactacagag
gatatattcaatagactaaacctagatcatttggaacatggcagttcagtgtcgaaggag
ttaatgagattgatgaagattccagtagataattacaataacatccttactgtgcttgag
ttacagcattttggaccgttgtttgagtactttgattatcagagtcgtaaagtgatgagc
tgttacctgattaccaatgctttagagaatgagacagaaattccaagccaggaacaagtt
gacagtttgttatcaatcgtcagtgtattagtacaagaccagaatgatcaacctgaggaa
ggggatgatccggaagattttgccgaggagcagggactcatgggaaggtttattcatctc
ctacagtctgaggatgcaaaccaacaatatctgatattgaacacagccaggaaacatttt
ggtgctggtggtgataagaggatcaagtttacactgccacctatcgtcttttcagcatac
aggctagccaatagatacaaggaccattctgatgaggatgagaactgggagaagaaatgt
cagaagatattccagttttgtcaccagactataggtgccctcatcaaggcagaacaggct
gagataccactgaggttgtttctacagggtgccatggcagctggaggtattgggtttgaa
aaccacgagacagtggcatatgagttcatgtcacaggcattttctctgtatgaggatgag
atctcagacagtaaggcacagttggcagctataacattaattattggtacactagaacag
atgtcatgttttggagaagagaatcacgaaccattacgtacacaatgtgccctagcggca
tctaaattactgaagaaacctgaccaatgtaggggagtggctacatgctctcatctgttc
tggtcagggaagagtacagtagaagatggggagacaagggatggtaagaggacgtcagat
tgtttaaagaaaggtgttaagatagctaaccagtgtatggacagttcagtacaagtacag
ctatttgtagaactactcaaccattatatatattactatgagaaaggaaacgaccaggtt
acaatacaagtactaaatcagttaatagccaaaataaaagaaacattaccaaacttggag
gctaatgaggagacggaacaaattaacaaacatttccagaatacagttgaacatttacag
gccatgaaacaagctgctgattctgaagggccagattatagtgacctcactgtttaa
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